Literature DB >> 20978313

Anharmonicity, mode-coupling and entropy in a fluctuating native protein.

A Kabakçioğlu1, D Yuret, M Gür, B Erman.   

Abstract

We develop a general framework for the analysis of residue fluctuations that simultaneously incorporates anharmonicity and mode-coupling in a unified formalism. We show that both deviations from the Gaussian model are important for modeling the multidimensional energy landscape of the protein Crambin (1EJG) in the vicinity of its native state. The effect of anharmonicity and mode-coupling on the fluctuational entropy is in the order of a few percent.

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Year:  2010        PMID: 20978313     DOI: 10.1088/1478-3975/7/4/046005

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  1 in total

1.  Why are large conformational changes well described by harmonic normal modes?

Authors:  Yves Dehouck; Ugo Bastolla
Journal:  Biophys J       Date:  2021-10-26       Impact factor: 4.033

  1 in total

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