| Literature DB >> 20977730 |
Wenjing Ruan1, Shuzhen Zhu, Haibing Wang, Fangying Xu, Hong Deng, Yu Ma, Maode Lai.
Abstract
BACKGROUND: In our previous studies, we have demonstrated that insulin-like growth factor binding protein-related protein1 (IGFBP-rP1) played its potential tumor suppressor role in colon cancer cells through apoptosis and senescence induction. In this study, we will further uncover the role of IGFBP-rP1 in colon cancer differentiation and a possible mechanism by revealing responsible genes.Entities:
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Year: 2010 PMID: 20977730 PMCID: PMC2987981 DOI: 10.1186/1476-4598-9-281
Source DB: PubMed Journal: Mol Cancer ISSN: 1476-4598 Impact factor: 27.401
Primer sequences used in rtRT-PCR
| Gene | Primer | Product | Design |
|---|---|---|---|
| AREG | 5' CGGGAGCCGACTATGACTACTC 3' | 100 | [ |
| IRS1 | 5'CAGAGGACCGTCAGTAGCTCAA 3' | 135 | [ |
| CDKN2B | 5'CACCGTTGGCCGTAAACTTAAC 3' | 96 | [ |
| ID1 | 5' ATTTCTTCTCGTTTTCACAGGC 3' | 174 | [ |
| SOX-9 | 5'AGGTGCTCAAAGGCTACGACT 3' | 359 | [ |
| STC1 | 5' AACCCTGAAGCCATCACTG 3' | 78 | [ |
| TACSTD1 | 5'TGTTTGGTGATGAAGGCAGA 3' | 324 | Primer 5.0 |
| TAGLN | 5'ATCCTGTCTGTCCGAACCC 3' | 184 | Primer 5.0 |
| FRMD4A | 5' TGGCTTCTCACTTCAATCT 3' | 134 | Primer 5.0 |
| IER5L | 5' AGCCCTTGGAGCCTCTGCA 3' | 214 | Primer 5.0 |
| SP140 | 5' TGATCCTCCAAGAATACG 3' | 141 | Primer 5.0 |
| SYN1 | 5'GTGTCAGGGAACTGGAAGACC 3' | 192 | Primer 5.0 |
| LAMB1 | 5' GAAGACGGGAAGAAAGGG 3' | 245 | Primer 5.0 |
| KERATIN 7 | 5' CAATGAGACGGAGTTGACAG 3' | 304 | Primer 5.0 |
| KERATIN 8 | 5' TTGCAGATGCCGAGCAGCGT 3' | 576 | Primer 5.0 |
| PROFILIN2 | 5' ATTGTCGGCTACTGCG 3' | 237 | Primer 5.0 |
| GAPDH | 5' ACGGATTTGGTCGTATTGGG 3' | 213 | Primer 5.0 |
Figure 1IGFBP-rP1's expression in normal colonic epithelium and primary colon cancer. Representative images of IGFBP-rP1 detection by immunohistochemistry staining in human colonic tissue sections. Magnification: _200. A. IGFBP-rP1 expression localized to the terminally differentiated epithelium at the luminal surface of the bowel and at the tops of the colonic crypts. B. Strong expression of IGFBP-rP1 in low grade colorectal adenocarcinoma. C. Media expression of IGFBP-rP1 in medium grade colorectael adenocarcinoma. D. Weak expression of IGFBP-rP1 in high grade colorectal adenocarcionma.
Comparison of IGFBP-rP1's expression in paired cancerous and normal tissues
| IGFBP-rP1 expression in Cancerous tissue | IGFBP-rP1 expression in paired Normal tissue | Total | Significance | ||
|---|---|---|---|---|---|
| 0 | 1 | 2 | |||
| 0 | 1 | 4 | 3 | 8 | |
| 1 | 26 | 87 | 21 | 134 | |
| 2 | 5 | 26 | 24 | 55 | |
| Total | 32 | 117 | 48 | 197 | 0.001* |
The staining of IGFBP-rP1 was divided into four grades (0-2), representing lack and mild of staining (0), intermediate staining (1), and strong staining (2). *The P value was calculated by McNemar-Bowker Test.
Correlation between IGFBP-rP1 expression and differentiation in colorectal carcinoma
| IGFBP-rP1 expression | Gradea | Total | Significance | |
|---|---|---|---|---|
| Low | High | |||
| 0 | 3 | 9 | 12 | |
| 1 | 102 | 46 | 148 | |
| 2 | 43 | 18 | 61 | |
| Total | 148 | 73 | 221 | 0.006* |
The staining of IGFBP-rP1 was divided into three grades (0-2), representing lack and mild of staining (0), intermediate staining (1), and strong staining (2).
ahistologic grade: low grade (gland formation >50% in tubular adenocarcinoma and papillary carcinoma) and high grade (gland formation <50% in tubular adenocarcinoma, mucinous adenocarcinoma, signet ring cell carcinoma, and undifferentiated carcinoma).*The P value was calculated by chi-square test.
Figure 2Morphology of IGFBP-rP1 expressed cells and the control cells . Three colon cancer cell lines (RKO, SW620, CW2) were cultured in DMEM medium. Phase-contrast micrographs of various cells were photographed. A, Parental blank cells (-bl). B, Cells transfected with PcDNA3.1 empty vector (-ev). C, Cells transfected with PcDNA3.1(IGFBP-rP1) (-rp). D, Cells treated with recombinant IGFBP-rP1 protein for 48 hr (-pr, 4 μg/ml for SW620 and CW2, 10 μg/ml for RKO,). RKO cells, Magnification: 100. SW620, CW2 cells, Magnification: 200.
Figure 3Well known differentiation marker analysis after IGFBP-rP1 transfection. The experiments were conducted in three colon cancer cell lines: RKO, SW620, CW2. The parental blank cells (-bl), PcDNA3.1 empty vector transfectants (-ev), and PcDNA3.1(IGFBP-rP1) transfectants (-rp), were cultured in DMEM medium. A:Total cell lysates and supernatants were harvested and assayed for alkaline phosphatase activity assessing. Results represent the mean (± SD) of three experiments.*p < 0.05. B. Total cell lysates were harvested and assayed for CEA, CDX2 expression. Also shown are the corresponding reprobings of these blots with actin as a loading control. This blot is representative of those obtained when the experiment was performed six times.
Figure 4Well known differentiation marker analysis after recombinant IGFBP-rP1 stimulation. The experiments were conducted in three colon cancer cell lines: RKO, SW620, CW2. After attachment for 24 hr, the cells were then stimulated with (-pr, for RKO cells, 10 μg/ml, For SW620 and CW2 cells, 4 μg/ml) or without recombinant IGFBP-rP1 protein (-bl) in medium without FBS. Forty-eight hours after IGFBP-rP1 addition, expression of differentiation markers were performed in the cell lysates and supernatants. A:Total cell lysates and supernatants were harvested and assayed for AKP activity assessing. Results represent the mean (± SD) of three experiments.*p < 0.05. B. Total cell lysates were harvested and assayed for CEA, CDX2 expression. Also shown are the corresponding reprobings of these blots with actin as a loading control. This blot is representative of those obtained when the experiment was performed six times.
Figure 5Hierarchical clustering from six samples, based on the differentially expressed 115 probesets. RNA samples from three independent biological replicate studies of RKO cells transfected with either PcDNA3.1(IGFBP-rP1) (three single cell clones, named RP5, RP6, RP7)or with either empty vector control (three single cell clones, named as EV5, EV6, EV7) were labeled and hybridized to Affymetrix U133 plus 2.0 GeneChips. Gene expression data were analyzed with GCOS1.2. One hundred and fifteen differentially expressed probesets according to a signal intensity cutoff protocol described in the text were selected for hierarchical clustering using GeneSpring 7.2. Genes with similar expression profiles were grouped together and the resulting gene tree is shown. Strong replicate clustering was shown. The left three lines mean the results in EV 5, EV6, EV7. The right three lines mean the results inRP5, RP6, RP7. Red represents up-regulation, green represents down-regulation. Black indicates no change. Quantitative data for the magnitude of each gene expression change, together with gene descriptions are shown in Table 4.
Seventy-eight reproducible differentially expressed genes induced by IGFBP-rP1 in RKO cells
| the cytoskeleton and actin binding | Nuclear transcription |
|---|---|
| [NM_004342] CALD1 (1, 1.4, 0.7) * | [NM_024496] C14orf4 (-0.3,0.1(NC),-0.3) |
| [NM_001457] FLNB (0.4,1.4,-0.3) | [NM_032883] C20orf100 (-0.8,-0.2(NC),-0.6) |
| [NM_018027] FRMD4A (0.5,0.6,0.5) * | [NM_001964] EGR1 (0.7,0.4,-0.1) |
| [NM_005556] KRT7 (-0.2,-0.3,-0.2 (NC**)) | [NM_012081] ELL2,(0.2,-0.6,-1.1) |
| [NM_002273] KRT8(-0.7,-0.3 (NC),-1) | [NM_005252] FOS (1.1,0.6,-0.5) |
| [NM_002281] KRTHB1 (-3.8,0.7,-1.3) | [NM_017445] H2BFS (0.5,0.7,0) |
| [NM_002628] PFN2 (0.3,-0.7,-0.8) | [NM_080593] HIST1H2BK (0.5,0.6,-0.1(NC)) |
| [NM_006950] SYN1 (-1.7,-1.5,-2.7) * | [NM_002165] ID1 (-1.2,-1.2,-1) * |
| [NM_001001522] TAGLN (1,1.6,0.6) * | [NM_002167] ID3 (-0.3(NC),-0.9,-0.7) |
| [NM_014903] NAV3 (0.9,0.4,0.6) * | |
| [NM_001657] AREG (-2.7,-1.6,-0.4) * | [NM_002135] NR4A1 (0.6,0.9,-0.6 (NC)) |
| [NM_004406] DMBT1 (0.5,-1.4,-1) | [NM_006186] NR4A2 (0.4,1,-0.4) |
| [NM_006851] GLIPR1 (0.3,0.1,0) | [NM_003489] NRIP1 (-0.9,0.4, -0.3) |
| [NM_001553] IGFBP-rP1 (6.6,5.6,5.9) * | [NM_005902] SMAD3 (-0.5,0.1,-0.6) |
| [NM_003155] STC1 (-2.7,-3.8,-1.5) * | [NM_001005176] SP140 (1.1,1.3,0.6) * |
| [NM_003236] TGFA (-0.3, -0.5, -0.5) | [NM_006022] TSC22D1 (-0.3(NC), -0.6,-0.5) |
| [NM_003254] TIMP1 (-0.1(NC),-0.3, -0.6) | [NM_024836]ZNF672 (0.5,0.9,-0.1(NC)) |
| [NM_003255] TIMP2 (-4.5,-0.3 (NC),-1) | |
| [NM_022164] TINAGL1 (-0.9,0.9,-0.4) | [NM_032744] C6orf105 (-5 (NC),-1.5,-2.3) |
| [Hs.569345]C14orf34 (1.3,1.6,0.1(NC)) | |
| [NM_000700] ANNEXIN A1 (-1.8,-1.2.-0.5(NC)) | [NM_005127] CLEC2B (0.9,1.3,0.4(NC)) |
| [NM_004936] CDKN2B (-0.8,-1.7, -0.8) * | [NM_001004023] DYRK3 (0.8,0.9,-0.3(NC)) |
| [NM_018482] DDEF1 (0.3,0.6,0.1(NC)) | [NM_001008493] ENAH (0.4,0.4,0.1(NC)) |
| [NM_015675] GADD45B (1.1,0.8,0.2 (NC)) | [NM_001005915] ERBB3 (-0.8,0.2(NC),-0.4) |
| [NM_003641] IFITM1(-0.7,-1.5,-0.4 (NC)) | [NM_005330] HBE1 (4.3,-4.6,-1.5) |
| [NM_001025242] IRAK1 (-0.6 (NC), -1.5,-0.6) | [NM_005525] HSD11B1 (-3.1,-1.1,1.7) |
| [NM_014330] PPP1R15A (0.7,0.5, -0.2) | [NM_203434] IER5L (-0.7,-0.7,-0.7) * |
| [NM_173354] SNF1LK (-0.5,-0.2,0.5) | [NM_005544] IRS1 (-1.4,-0.7,-0.9) * |
| [NM_000346] SOX9 (-1.9,-1.5,-1.1) * | [NM_002288] LAIR2 (-0.9,-1.3,0.4) |
| [NM_002354] TACSTD1 (-0.7,-1.4,-1.9) * | [NM_002291] LAMB1 (-1.1,-0.6,-1) * |
| [NM_006669] LILRB1(-1.5,-1.2,-0.1 (NC)) | |
| [NM_004753] DHRS3 (-2.4,0.1 (NC),-1.6) | [NM_021070] LTBP3 (-1.1,0.5(NC),-0.6) |
| [NM_001005336] DNM1 (-0.6,-0.4,-0.3(NC)) | [NM_138794] LYPLAL1 (0.4,0.4,-0.3(NC)) |
| [NM_005261] GEM (0.8,0.5,0.1 (NC)) | [NM_024979] MCF2L (-0.1(NC),-2.6,-3.8) |
| [NM_015590] GPATCH4 (0.3,0.4,-0.1(NC)) | [NM_006818] MLLT11 (1,-1.4,-1) |
| [NM_003979] GPRC5A (-1.2,-0.1,-0.7) | [NM_176870] MT1K (-0.5,-0.2(NC),-0.6) |
| [NM_004637] RAB7 (0.5,0.5,-0.2) | [NM_000271] NPC1 (0.6,0.8,0.1) |
| [NM_002890] RASA1 (0.3,-0.4,-0.5) | [NM_002599] PDE2A (-2(NC),-1.7,-2.4) |
| [NM_007211] RASSF8 (0.4(MI***),1.9,2.5) | [NM_018444] PPM2C (-0.6,-0.5,0.2(NC)) |
| [NM_005168] RND3 (1,0.7, 0.1(NC)) | [NM_004155] SERPINB9 (-0.6,0.3 (NC),-0.9) |
| [NM_005415] SLC20A1 (0.2(NC), -0.3,-0.5) | |
| [NM_003364] UPP1(0.4,1,0.1(NC)) |
Numbers in parentheses are signal log ratio(log2fold change) in three clones, respectively. Positive number indicates up-regulation in IGFBP-rP1-RKO transfectants vs empty vector-RKO transfectants, whereas negative number indicates down-regulation in IGFBP-rP1-RKO transfectants vs empty vector-RKO transfectants. *genes reproducible in 3 clones; **NC: no change or great interruption; ***MI: Marginal Increase.
Figure 6Directed Acyclic Graph (DAG) of the enriched GO categories. The 115 gene probe sets differentially induced by IGFBP-rP1 were put to the gene ontology analysis. Shown is the result of DAG analysis, a directed graph with no directed cycles. The graph showed the significance of differently expressed genes and more specifically, the gene ontology terms present in numbers that are above random chance. P < 0.01 and at least 2 genes (which are colored red) and their non-enriched parents (which are colored black).
Figure 7Verification of selected microarray results by rtRT-PCR. The 16 reproducible differentially-expressed genes in 3 clones induced by IGFBP-rP1 in RKO cells and the differentially-expressed cytoskeleton associated genes keratin 7, keratin 8, profilin2 analysed by chip were selected for rtRT-PCR validation. RtRT-PCR was performed on RNA extracted from IGFBP-rP1-RKO transfectants and the control cells. Delta-delta Ct method was used to calculate relative fold changes normalized against the GAPDH gene. The relative fold change for IGFBP-rP1 from rtRT-PCR is 2.1 × 106. Results represent the mean (± SD) of six experiments.
Figure 8Verification of the differentially expressed genes in SW620-IGFBP-rP1 transfectants and CW2-IGFBP-rP1 transfectants. The expression of the 16 reproducible genes in 3 clones and the differentially-expressed cytoskeleton associated genes keratin 7, keratin 8, profilin2 analysed by chip were also analysed by rtRT-PCR in IGFBP-rP1-SW620 and IGFBP-rP1-CW2 transfectants versus empty vector control cells. RtRT-PCR was performed on RNA extracted from the transfectants and the control cells. Delta-delta Ct method was used to calculate relative fold changes normalized against the GAPDH gene. Results represent the mean (± SD) of six experiments.
Figure 9Gene expression changes during differentiation induced by butyrate in Caco2 cells. Caco2 cells were seeded into 60-mm culture dishes at 3 × 105 cells/plate. After 24 hr, cells were cultured in 4 mmol/L sodium butyrate for additional 24 hr, 48 hr, 72 hr. Results are averages of triplicate determinations. A. Total cell lysates with (72 hr point) or without butyrate stimulation were harvested and assayed for AKP activity assessing. Results represent the mean (± SD) of three experiments.*,**p < 0.05. B. Total cell lysates with (72 hr point) or without butyrate stimulation were harvested and assayed for CEA, CDX2 expression Also shown are the corresponding reprobings of these blots with actin as a loading control. This blot is representative of those obtained when the experiment was performed six times. C. Phase-contrast micrographs of cells with (72 hr point) or without butyrate stimulation were photographed. D. IGFBP-rP1 level analyzed by ELISA assay with (72 hr point)or without butyrate stimulation *P < 0.05. E. The relationship between AKP activity and the IGFBP-rP1 level during the sodium butyrate stimulation process. The correlation coefficient (r) = 0.945, P = 0.028. F. rtRT-PCR analysis of the IGFBP-rP1 induced differentially expressed genes (AREG, KRT8, P15, IER5L, IRS1, SOX9, TAGLN) in Caco2 cells with or without butyrate stimulation.