Literature DB >> 20975167

Visual exploration of high dimensional scalar functions.

Samuel Gerber1, Peer-Timo Bremer, Valerio Pascucci, Ross Whitaker.   

Abstract

An important goal of scientific data analysis is to understand the behavior of a system or process based on a sample of the system. In many instances it is possible to observe both input parameters and system outputs, and characterize the system as a high-dimensional function. Such data sets arise, for instance, in large numerical simulations, as energy landscapes in optimization problems, or in the analysis of image data relating to biological or medical parameters. This paper proposes an approach to analyze and visualizing such data sets. The proposed method combines topological and geometric techniques to provide interactive visualizations of discretely sampled high-dimensional scalar fields. The method relies on a segmentation of the parameter space using an approximate Morse-Smale complex on the cloud of point samples. For each crystal of the Morse-Smale complex, a regression of the system parameters with respect to the output yields a curve in the parameter space. The result is a simplified geometric representation of the Morse-Smale complex in the high dimensional input domain. Finally, the geometric representation is embedded in 2D, using dimension reduction, to provide a visualization platform. The geometric properties of the regression curves enable the visualization of additional information about each crystal such as local and global shape, width, length, and sampling densities. The method is illustrated on several synthetic examples of two dimensional functions. Two use cases, using data sets from the UCI machine learning repository, demonstrate the utility of the proposed approach on real data. Finally, in collaboration with domain experts the proposed method is applied to two scientific challenges. The analysis of parameters of climate simulations and their relationship to predicted global energy flux and the concentrations of chemical species in a combustion simulation and their integration with temperature.

Entities:  

Mesh:

Year:  2010        PMID: 20975167      PMCID: PMC3099238          DOI: 10.1109/TVCG.2010.213

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  12 in total

1.  Nonlinear dimensionality reduction by locally linear embedding.

Authors:  S T Roweis; L K Saul
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  A global geometric framework for nonlinear dimensionality reduction.

Authors:  J B Tenenbaum; V de Silva; J C Langford
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

3.  A topological approach to simplification of three-dimensional scalar functions.

Authors:  Attila Gyulassy; Vijay Natarajan; Valerio Pascucci; Peer-Timo Bremer; Computer Society; Bernd Hamann
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Jul-Aug       Impact factor: 4.579

4.  Reducing the dimensionality of data with neural networks.

Authors:  G E Hinton; R R Salakhutdinov
Journal:  Science       Date:  2006-07-28       Impact factor: 47.728

5.  Understanding the structure of the turbulent mixing layer in hydrodynamic instabilities.

Authors:  D Laney; P T Bremer; A Mascarenhas; P Miller; V Pascucci
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Sep-Oct       Impact factor: 4.579

6.  Topologically clean distance fields.

Authors:  Attila Gyulassy; Mark Duchaineau; Vijay Natarajan; Valerio Pascucci; Eduardo Bringa; Andrew Higginbotham; Bernd Hamann
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Nov-Dec       Impact factor: 4.579

7.  Analyzing and tracking burning structures in lean premixed hydrogen flames.

Authors:  Peer-Timo Bremer; Gunther H Weber; Valerio Pascucci; Marc Day; John B Bell
Journal:  IEEE Trans Vis Comput Graph       Date:  2010 Mar-Apr       Impact factor: 4.579

8.  A topological hierarchy for functions on triangulated surfaces.

Authors:  Peer-Timo Bremer; Herbert Edelsbrunner; Bernd Hamann; Valerio Pascucci
Journal:  IEEE Trans Vis Comput Graph       Date:  2004 Jul-Aug       Impact factor: 4.579

9.  Changes in size of normal lateral ventricles during aging determined by computerized tomography.

Authors:  S A Barron; L Jacobs; W R Kinkel
Journal:  Neurology       Date:  1976-11       Impact factor: 9.910

10.  Topological landscapes: a terrain metaphor for scientific data.

Authors:  Gunther Weber; Peer-Timo Bremer; Valerio Pascucci
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Nov-Dec       Impact factor: 4.579

View more
  4 in total

1.  From Quantification to Visualization: A Taxonomy of Uncertainty Visualization Approaches.

Authors:  Kristin Potter; Paul Rosen; Chris R Johnson
Journal:  IFIP Adv Inf Commun Technol       Date:  2012

2.  Uncertainty Visualization of 2D Morse Complex Ensembles Using Statistical Summary Maps.

Authors:  Tushar M Athawale; Dan Maljovec; Lin Yan; Chris R Johnson; Valerio Pascucci; Bei Wang
Journal:  IEEE Trans Vis Comput Graph       Date:  2022-02-25       Impact factor: 4.579

3.  Morse-Smale Regression.

Authors:  Samuel Gerber; Oliver Rübel; Peer-Timo Bremer; Valerio Pascucci; Ross T Whitaker
Journal:  J Comput Graph Stat       Date:  2013-01-01       Impact factor: 2.302

4.  NetMets: software for quantifying and visualizing errors in biological network segmentation.

Authors:  David Mayerich; Chris Bjornsson; Jonathan Taylor; Badrinath Roysam
Journal:  BMC Bioinformatics       Date:  2012-05-18       Impact factor: 3.169

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.