Literature DB >> 20972441

Genome-wide patterns of genetic variation among elite maize inbred lines.

Jinsheng Lai1, Ruiqiang Li, Xun Xu, Weiwei Jin, Mingliang Xu, Hainan Zhao, Zhongkai Xiang, Weibin Song, Kai Ying, Mei Zhang, Yinping Jiao, Peixiang Ni, Jianguo Zhang, Dong Li, Xiaosen Guo, Kaixiong Ye, Min Jian, Bo Wang, Huisong Zheng, Huiqing Liang, Xiuqing Zhang, Shoucai Wang, Shaojiang Chen, Jiansheng Li, Yan Fu, Nathan M Springer, Huanming Yang, Jian Wang, Jingrui Dai, Patrick S Schnable, Jun Wang.   

Abstract

We have resequenced a group of six elite maize inbred lines, including the parents of the most productive commercial hybrid in China. This effort uncovered more than 1,000,000 SNPs, 30,000 indel polymorphisms and 101 low-sequence-diversity chromosomal intervals in the maize genome. We also identified several hundred complete genes that show presence/absence variation among these resequenced lines. We discuss the potential roles of complementation of presence/absence variations and other deleterious mutations in contributing to heterosis. High-density SNP and indel polymorphism markers reported here are expected to be a valuable resource for future genetic studies and the molecular breeding of this important crop.

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Year:  2010        PMID: 20972441     DOI: 10.1038/ng.684

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  31 in total

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Journal:  Science       Date:  2009-11-20       Impact factor: 47.728

Review 5.  The genetics of inbreeding depression.

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6.  Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).

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9.  Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.

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  200 in total

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3.  Advances in biotechnology and linking outputs to variation in complex traits: Plant and Animal Genome meeting January 2012.

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5.  A crop of maize variants.

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6.  Into the wild: The soybean genome meets its undomesticated relative.

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7.  Crop genetics: Resequencing sows the seeds.

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8.  In praise of maize.

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9.  Genome-wide association study of leaf architecture in the maize nested association mapping population.

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