Literature DB >> 20971908

Proximity of the start codon to a leaderless mRNA's 5' terminus is a strong positive determinant of ribosome binding and expression in Escherichia coli.

Karthik M Krishnan1, William J Van Etten, Gary R Janssen.   

Abstract

An AUG start codon is an important determinant of ribosome binding and expression of leaderless mRNAs in Escherichia coli. Using reporter constructs encoding mRNAs where the AUG start codon is preceded by untranslated leaders of various length and sequence, we find that close proximity of the start codon to the 5' terminus and the leader sequence are strong determinants of both ribosome binding and expression.

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Year:  2010        PMID： 20971908      PMCID： PMC3008523          DOI： 10.1128/JB.00756-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  28 in total

1.  A downstream CA repeat sequence increases translation from leadered and unleadered mRNA in Escherichia coli.

Authors:  J Martin-Farmer; G R Janssen
Journal:  Mol Microbiol       Date:  1999-02       Impact factor: 3.501

2.  Translation of the prophage lambda cl transcript.

Authors:  C S Shean; M E Gottesman
Journal:  Cell       Date:  1992-08-07       Impact factor: 41.582

Review 3.  The GUS reporter gene system.

Authors:  R A Jefferson
Journal:  Nature       Date:  1989-12-14       Impact factor: 49.962

4.  An AUG initiation codon, not codon-anticodon complementarity, is required for the translation of unleadered mRNA in Escherichia coli.

Authors:  W J Van Etten; G R Janssen
Journal:  Mol Microbiol       Date:  1998-03       Impact factor: 3.501

5.  Unusual transcriptional and translational features of the aminoglycoside phosphotransferase gene (aph) from Streptomyces fradiae.

Authors:  G R Janssen; J M Ward; M J Bibb
Journal:  Genes Dev       Date:  1989-03       Impact factor: 11.361

6.  Cloning and analysis of an Escherichia coli operon containing the rpmF gene for ribosomal protein L32 and the gene for a 30-kilodalton protein.

Authors:  Y Tanaka; A Tsujimura; N Fujita; S Isono; K Isono
Journal:  J Bacteriol       Date:  1989-10       Impact factor: 3.490

7.  The highly efficient translation initiation region from the Escherichia coli rpsA gene lacks a shine-dalgarno element.

Authors:  Patricia Skorski; Prune Leroy; Olivier Fayet; Marc Dreyfus; Sylvie Hermann-Le Denmat
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

8.  Nucleotide sequence of the streptothricin acetyltransferase gene from Streptomyces lavendulae and its expression in heterologous hosts.

Authors:  S Horinouchi; K Furuya; M Nishiyama; H Suzuki; T Beppu
Journal:  J Bacteriol       Date:  1987-05       Impact factor: 3.490

9.  Unusual ribosome binding properties of mRNA encoding bacteriophage lambda repressor.

Authors:  A G Balakin; E A Skripkin; I N Shatsky; A A Bogdanov
Journal:  Nucleic Acids Res       Date:  1992-02-11       Impact factor: 16.971

10.  Mutagenesis of the three bases preceding the start codon of the beta-galactosidase mRNA and its effect on translation in Escherichia coli.

Authors:  A Hui; J Hayflick; K Dinkelspiel; H A de Boer
Journal:  EMBO J       Date:  1984-03       Impact factor: 11.598
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  18 in total

1.  A 5'-terminal phosphate is required for stable ternary complex formation and translation of leaderless mRNA in Escherichia coli.

Authors:  Jacqueline Giliberti; Sean O'Donnell; William J Van Etten; Gary R Janssen
Journal:  RNA       Date:  2012-01-30       Impact factor: 4.942

Review 2.  Bacterial transcriptomics: what is beyond the RNA horiz-ome?

Authors:  Marc Güell; Eva Yus; Maria Lluch-Senar; Luis Serrano
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

3.  A single missense mutation in a coiled-coil domain of Escherichia coli ribosomal protein S2 confers a thermosensitive phenotype that can be suppressed by ribosomal protein S1.

Authors:  Leonid V Aseev; Anton O Chugunov; Roman G Efremov; Irina V Boni
Journal:  J Bacteriol       Date:  2012-10-26       Impact factor: 3.490

4.  S1 ribosomal protein and the interplay between translation and mRNA decay.

Authors:  Francesco Delvillani; Giulia Papiani; Gianni Dehò; Federica Briani
Journal:  Nucleic Acids Res       Date:  2011-06-17       Impact factor: 16.971

5.  The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression.

Authors:  Vinoy K Ramachandran; Neil Shearer; Jobin J Jacob; Cynthia M Sharma; Arthur Thompson
Journal:  BMC Genomics       Date:  2012-01-17       Impact factor: 3.969

6.  Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo.

Authors:  Kenji Nakahigashi; Yuki Takai; Yuh Shiwa; Mei Wada; Masayuki Honma; Hirofumi Yoshikawa; Masaru Tomita; Akio Kanai; Hirotada Mori
Journal:  BMC Genomics       Date:  2014-12-16       Impact factor: 3.969

7.  Escherichia coli and Staphylococcus phages: effect of translation initiation efficiency on differential codon adaptation mediated by virulent and temperate lifestyles.

Authors:  Ramanandan Prabhakaran; Shivapriya Chithambaram; Xuhua Xia
Journal:  J Gen Virol       Date:  2015-01-22       Impact factor: 3.891

8.  Single nucleotide resolution RNA-seq uncovers new regulatory mechanisms in the opportunistic pathogen Streptococcus agalactiae.

Authors:  Isabelle Rosinski-Chupin; Elisabeth Sauvage; Odile Sismeiro; Adrien Villain; Violette Da Cunha; Marie-Elise Caliot; Marie-Agnès Dillies; Patrick Trieu-Cuot; Philippe Bouloc; Marie-Frédérique Lartigue; Philippe Glaser
Journal:  BMC Genomics       Date:  2015-05-30       Impact factor: 3.969

9.  Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021.

Authors:  Jan-Philip Schlüter; Jan Reinkensmeier; Melanie J Barnett; Claus Lang; Elizaveta Krol; Robert Giegerich; Sharon R Long; Anke Becker
Journal:  BMC Genomics       Date:  2013-03-07       Impact factor: 3.969

10.  Distribution and diversity of ribosome binding sites in prokaryotic genomes.

Authors:  Damilola Omotajo; Travis Tate; Hyuk Cho; Madhusudan Choudhary
Journal:  BMC Genomics       Date:  2015-08-14       Impact factor: 3.969
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