Literature DB >> 20969366

Efficient on the fly calculation of time correlation functions in computer simulations.

Jorge Ramírez1, Sathish K Sukumaran, Bart Vorselaars, Alexei E Likhtman.   

Abstract

Time correlation functions yield profound information about the dynamics of a physical system and hence are frequently calculated in computer simulations. For systems whose dynamics span a wide range of time, currently used methods require significant computer time and memory. In this paper, we discuss the multiple-tau correlator method for the efficient calculation of accurate time correlation functions on the fly during computer simulations. The multiple-tau correlator is efficacious in terms of computational requirements and can be tuned to the desired level of accuracy. Further, we derive estimates for the error arising from the use of the multiple-tau correlator and extend it for use in the calculation of mean-square particle displacements and dynamic structure factors. The method described here, in hardware implementation, is routinely used in light scattering experiments but has not yet found widespread use in computer simulations.

Year:  2010        PMID: 20969366     DOI: 10.1063/1.3491098

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  A scalable correlator for multichannel diffuse correlation spectroscopy.

Authors:  Christopher J Stapels; Noah J Kolodziejski; Daniel McAdams; Matthew J Podolsky; Daniel E Fernandez; Dana Farkas; James F Christian
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-07

2.  'RNA modulation of transport properties and stability in phase-separated condensates.

Authors:  Andrés R Tejedor; Adiran Garaizar; Jorge Ramírez; Jorge R Espinosa
Journal:  Biophys J       Date:  2021-11-09       Impact factor: 4.033

3.  Protein structural transitions critically transform the network connectivity and viscoelasticity of RNA-binding protein condensates but RNA can prevent it.

Authors:  Andres R Tejedor; Ignacio Sanchez-Burgos; Maria Estevez-Espinosa; Adiran Garaizar; Rosana Collepardo-Guevara; Jorge Ramirez; Jorge R Espinosa
Journal:  Nat Commun       Date:  2022-09-29       Impact factor: 17.694

4.  Slip-spring simulations of different constraint release environments for linear polymer chains.

Authors:  Teng Ma; Guochang Lin; Huifeng Tan
Journal:  R Soc Open Sci       Date:  2020-03-18       Impact factor: 2.963

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.