Literature DB >> 20967605

High-throughput SuperSAGE.

Hideo Matsumura1, Kentaro Yoshida, Shujun Luo, Detlev H Krüger, Günter Kahl, Gary P Schroth, Ryohei Terauchi.   

Abstract

SuperSAGE is a method of digital gene expression profiling that allows isolation of 26-bp tag fragments from expressed transcripts. Combined with the ultrahigh-throughput sequencing technologies, SuperSAGE enables analysis of millions of transcripts with lower cost and reduced effort and time. In this chapter, we present an updated protocol for this High-throughput SuperSAGE method with a special emphasis on the technique of library multiplexing.

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Year:  2011        PMID: 20967605     DOI: 10.1007/978-1-60761-944-4_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

1.  Dual 3'Seq using deepSuperSAGE uncovers transcriptomes of interacting Salmonella enterica Typhimurium and human host cells.

Authors:  Fabian Afonso-Grunz; Klaus Hoffmeier; Sören Müller; Alexander J Westermann; Björn Rotter; Jörg Vogel; Peter Winter; Günter Kahl
Journal:  BMC Genomics       Date:  2015-04-19       Impact factor: 3.969

2.  HT-SuperSAGE of the gut tissue of a Vip3Aa-resistant Heliothis virescens (Lepidoptera: Noctuidae) strain provides insights into the basis of resistance.

Authors:  Camilo Ayra-Pardo; Maria E Ochagavía; Ben Raymond; Asim Gulzar; Lianet Rodríguez-Cabrera; Claudia Rodríguez de la Noval; Ivis Morán Bertot; Ryohei Terauchi; Kentaro Yoshida; Hideo Matsumura; Pilar Téllez Rodríguez; Daily Hernández Hernández; Orlando Borrás-Hidalgo; Denis J Wright
Journal:  Insect Sci       Date:  2017-12-01       Impact factor: 3.262

3.  Expression Analysis of Sugarcane Aquaporin Genes under Water Deficit.

Authors:  Manassés Daniel da Silva; Roberta Lane de Oliveira Silva; José Ribamar Costa Ferreira Neto; Ana Carolina Ribeiro Guimarães; Daniela Truffi Veiga; Sabrina Moutinho Chabregas; William Lee Burnquist; Günter Kahl; Ana Maria Benko-Iseppon; Ederson Akio Kido
Journal:  J Nucleic Acids       Date:  2013-12-29
  3 in total

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