Literature DB >> 20962126

A systematic literature review of automated clinical coding and classification systems.

Mary H Stanfill1, Margaret Williams, Susan H Fenton, Robert A Jenders, William R Hersh.   

Abstract

Clinical coding and classification processes transform natural language descriptions in clinical text into data that can subsequently be used for clinical care, research, and other purposes. This systematic literature review examined studies that evaluated all types of automated coding and classification systems to determine the performance of such systems. Studies indexed in Medline or other relevant databases prior to March 2009 were considered. The 113 studies included in this review show that automated tools exist for a variety of coding and classification purposes, focus on various healthcare specialties, and handle a wide variety of clinical document types. Automated coding and classification systems themselves are not generalizable, nor are the results of the studies evaluating them. Published research shows these systems hold promise, but these data must be considered in context, with performance relative to the complexity of the task and the desired outcome.

Mesh:

Year:  2010        PMID: 20962126      PMCID: PMC3000748          DOI: 10.1136/jamia.2009.001024

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  18 in total

1.  Comparing expert systems for identifying chest x-ray reports that support pneumonia.

Authors:  W W Chapman; P J Haug
Journal:  Proc AMIA Symp       Date:  1999

2.  Can natural language processing aid outpatient coders?

Authors:  H R Warner
Journal:  J AHIMA       Date:  2000-09

3.  Assessing the accuracy of an automated coding system in emergency medicine.

Authors:  W C Morris; D T Heinze; H R Warner Jr; A Primack; A E Morsch; R E Sheffer; M A Jennings; M L Morsch; M A Jimmink
Journal:  Proc AMIA Symp       Date:  2000

4.  An applied evaluation of SNOMED CT as a clinical vocabulary for the computerized diagnosis and problem list.

Authors:  Henry Wasserman; Jerome Wang
Journal:  AMIA Annu Symp Proc       Date:  2003

5.  Creating a text classifier to detect radiology reports describing mediastinal findings associated with inhalational anthrax and other disorders.

Authors:  Wendy Webber Chapman; Gregory F Cooper; Paul Hanbury; Brian E Chapman; Lee H Harrison; Michael M Wagner
Journal:  J Am Med Inform Assoc       Date:  2003-06-04       Impact factor: 4.497

6.  Three approaches to automatic assignment of ICD-9-CM codes to radiology reports.

Authors:  Ira Goldstein; Anna Arzrumtsyan; Ozlem Uzuner
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

7.  The content coverage of clinical classifications. For The Computer-Based Patient Record Institute's Work Group on Codes & Structures.

Authors:  C G Chute; S P Cohn; K E Campbell; D E Oliver; J R Campbell
Journal:  J Am Med Inform Assoc       Date:  1996 May-Jun       Impact factor: 4.497

8.  Automatic disease coding: the 'fruit-machine' method in general practice.

Authors:  H P Dinwoodie; R W Howell
Journal:  Br J Prev Soc Med       Date:  1973-02

9.  Phase II evaluation of clinical coding schemes: completeness, taxonomy, mapping, definitions, and clarity. CPRI Work Group on Codes and Structures.

Authors:  J R Campbell; P Carpenter; C Sneiderman; S Cohn; C G Chute; J Warren
Journal:  J Am Med Inform Assoc       Date:  1997 May-Jun       Impact factor: 4.497

10.  Limited parsing of notational text visit notes: ad-hoc vs. NLP approaches.

Authors:  R C Barrows Jr; M Busuioc; C Friedman
Journal:  Proc AMIA Symp       Date:  2000
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  50 in total

1.  Voice-dictated versus typed-in clinician notes: linguistic properties and the potential implications on natural language processing.

Authors:  Kai Zheng; Qiaozhu Mei; Lei Yang; Frank J Manion; Ulysses J Balis; David A Hanauer
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  Enhancing clinical concept extraction with distributional semantics.

Authors:  Siddhartha Jonnalagadda; Trevor Cohen; Stephen Wu; Graciela Gonzalez
Journal:  J Biomed Inform       Date:  2011-11-07       Impact factor: 6.317

3.  Data integration of structured and unstructured sources for assigning clinical codes to patient stays.

Authors:  Elyne Scheurwegs; Kim Luyckx; Léon Luyten; Walter Daelemans; Tim Van den Bulcke
Journal:  J Am Med Inform Assoc       Date:  2015-08-27       Impact factor: 4.497

4.  Improving quality and safety of care using "technovigilance": an ethnographic case study of secondary use of data from an electronic prescribing and decision support system.

Authors:  Mary Dixon-Woods; Sabi Redwood; Myles Leslie; Joel Minion; Graham P Martin; Jamie J Coleman
Journal:  Milbank Q       Date:  2013-09       Impact factor: 4.911

5.  Automated concept-level information extraction to reduce the need for custom software and rules development.

Authors:  Leonard W D'Avolio; Thien M Nguyen; Sergey Goryachev; Louis D Fiore
Journal:  J Am Med Inform Assoc       Date:  2011-06-22       Impact factor: 4.497

6.  Supporting information retrieval from electronic health records: A report of University of Michigan's nine-year experience in developing and using the Electronic Medical Record Search Engine (EMERSE).

Authors:  David A Hanauer; Qiaozhu Mei; James Law; Ritu Khanna; Kai Zheng
Journal:  J Biomed Inform       Date:  2015-05-13       Impact factor: 6.317

7.  Computer-Assisted Diagnostic Coding: Effectiveness of an NLP-based approach using SNOMED CT to ICD-10 mappings.

Authors:  Anthony N Nguyen; Donna Truran; Madonna Kemp; Bevan Koopman; David Conlan; John O'Dwyer; Ming Zhang; Sarvnaz Karimi; Hamed Hassanzadeh; Michael J Lawley; Damian Green
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

8.  Can structured EHR data support clinical coding? A data mining approach.

Authors:  José Carlos Ferrão; Mónica Duarte Oliveira; Filipe Janela; Henrique M G Martins; Daniel Gartner
Journal:  Health Syst (Basingstoke)       Date:  2020-03-01

Review 9.  Recent Advances in Clinical Natural Language Processing in Support of Semantic Analysis.

Authors:  S Velupillai; D Mowery; B R South; M Kvist; H Dalianis
Journal:  Yearb Med Inform       Date:  2015-08-13

10.  POETenceph - Automatic identification of clinical notes indicating encephalopathy using a realist ontology.

Authors:  Kristina M Doing-Harris; Charlene R Weir; Sean Igo; Jianlin Shi; Yijun Shao; John F Hurdle
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05
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