Literature DB >> 20961124

Optimized measurement temperature gives access to the solution structure of a 49 kDa homohexameric β-propeller.

Ilka Varnay1, Vincent Truffault, Sergej Djuranovic, Astrid Ursinus, Murray Coles, Horst Kessler.   

Abstract

Ph1500 is a homohexameric, two-domain protein of unknown function from the hyperthermophilic archaeon Pyrococcus horikoshii. The C-terminal hexamerization domain (Ph1500C) is of particular interest, as it lacks sequence homology to proteins of known structure. However, it resisted crystallization for X-ray analysis, and proteins of this size (49 kDa) present a considerable challenge to NMR structure determination in solution. We solved the high-resolution structure of Ph1500C, exploiting the hyperthermophilic nature of the protein to minimize unfavorable relaxation properties by high-temperature measurement. Thus, the side chain assignment (97%) and structure determination became possible at full proton density. To our knowledge, Ph1500C is the largest protein for which this has been achieved. To minimize detrimental fast water exchange of amide protons at increased temperature, we employed a strategy where the temperature was optimized separately for backbone and side chain experiments.

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Year:  2010        PMID: 20961124     DOI: 10.1021/ja1064608

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  2 in total

1.  A VPS13D spastic ataxia mutation disrupts the conserved adaptor-binding site in yeast Vps13.

Authors:  Samantha K Dziurdzik; Björn D M Bean; Michael Davey; Elizabeth Conibear
Journal:  Hum Mol Genet       Date:  2020-03-13       Impact factor: 6.150

Review 2.  The Vps13 Family of Lipid Transporters and Its Role at Membrane Contact Sites.

Authors:  Samantha Katarzyna Dziurdzik; Elizabeth Conibear
Journal:  Int J Mol Sci       Date:  2021-03-12       Impact factor: 5.923

  2 in total

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