Literature DB >> 20951070

Computational analysis of water residence on ceramide and sphingomyelin bilayer membranes.

Yosuke Imai1, Xinli Liu, Junya Yamagishi, Kenichi Mori, Saburo Neya, Tyuji Hoshino.   

Abstract

Many physical chemical properties of lipid membranes, for example, the thickness, phase state, order parameter, and fluidity, can be understood straightforwardly. Water residence on a membrane is, however, an exception. To tackle this problem, we have performed molecular dynamics simulations of the distribution of water normal to the surface of several lipid membranes and from this deduced the associated water residence time. Our analysis of the results clearly indicates that lipid membranes have hydration shells on their surface, just as a solute in an aqueous solution does, and that the water residence time can be estimated from the potential for the mean force field derived from the distribution function of the water. We have done this atomic-scale analysis for ceramide bilayers and contrasted the calculation results with those for sphingomyelin bilayers, revealing that sphingomyelin bilayers can retain water molecules longer than ceramide bilayers and that the total number of water molecules retained on the membrane surface of sphingomyelin is larger than that for ceramide. In addition, we find that not only polar atoms of lipid molecules, such as oxygen, but also non-polar atoms, such as carbon, influence the motion of water on the membranes.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20951070     DOI: 10.1016/j.jmgm.2010.09.002

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  4 in total

1.  Simulation study of the structure and phase behavior of ceramide bilayers and the role of lipid head group chemistry.

Authors:  Shan Guo; Timothy C Moore; Christopher R Iacovella; L Anderson Strickland; Clare McCabe
Journal:  J Chem Theory Comput       Date:  2013-11-12       Impact factor: 6.006

2.  Effect of Ceramide Tail Length on the Structure of Model Stratum Corneum Lipid Bilayers.

Authors:  Timothy C Moore; Remco Hartkamp; Christopher R Iacovella; Annette L Bunge; Clare McCabe
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

Review 3.  Plant lipid environment and membrane enzymes: the case of the plasma membrane H+-ATPase.

Authors:  Francisco Morales-Cedillo; Ariadna González-Solís; Lizbeth Gutiérrez-Angoa; Dora Luz Cano-Ramírez; Marina Gavilanes-Ruiz
Journal:  Plant Cell Rep       Date:  2015-01-11       Impact factor: 4.570

4.  Evaluation of Constrained and Restrained Molecular Dynamics Simulation Methods for Predicting Skin Lipid Permeability.

Authors:  Nicola Piasentin; Guoping Lian; Qiong Cai
Journal:  ACS Omega       Date:  2021-12-15
  4 in total

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