Literature DB >> 20946820

Imaging single mRNA molecules in yeast.

Hyun Youk1, Arjun Raj, Alexander van Oudenaarden.   

Abstract

Yeast cells in an isogenic population do not all display the same phenotypes. To study such variation within a population of cells, we need to perform measurements on each individual cell instead of measurements that average out the behavior of a cell over the entire population. Here, we provide the basic concepts and a step-by-step protocol for a recently developed technique enabling one such measurement: fluorescence in situ hybridization that renders single mRNA molecule visible in individual fixed cells.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20946820     DOI: 10.1016/S0076-6879(10)70017-3

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  12 in total

1.  Single-mRNA counting using fluorescent in situ hybridization in budding yeast.

Authors:  Tatjana Trcek; Jeffrey A Chao; Daniel R Larson; Hye Yoon Park; Daniel Zenklusen; Shailesh M Shenoy; Robert H Singer
Journal:  Nat Protoc       Date:  2012-02-02       Impact factor: 13.491

2.  Transcriptional and chromatin-based partitioning mechanisms uncouple protein scaling from cell size.

Authors:  Matthew P Swaffer; Jacob Kim; Devon Chandler-Brown; Maurice Langhinrichs; Georgi K Marinov; William J Greenleaf; Anshul Kundaje; Kurt M Schmoller; Jan M Skotheim
Journal:  Mol Cell       Date:  2021-11-02       Impact factor: 17.970

3.  Single-cell analysis of ribonucleotide reductase transcriptional and translational response to DNA damage.

Authors:  Aprotim Mazumder; Katja Tummler; Mark Bathe; Leona D Samson
Journal:  Mol Cell Biol       Date:  2012-11-26       Impact factor: 4.272

4.  Heritable capture of heterochromatin dynamics in Saccharomyces cerevisiae.

Authors:  Anne E Dodson; Jasper Rine
Journal:  Elife       Date:  2015-01-12       Impact factor: 8.140

5.  Whole-mount single molecule FISH method for zebrafish embryo.

Authors:  Yuma Oka; Thomas N Sato
Journal:  Sci Rep       Date:  2015-02-25       Impact factor: 4.379

6.  Granules harboring translationally active mRNAs provide a platform for P-body formation following stress.

Authors:  Jennifer Lui; Lydia M Castelli; Mariavittoria Pizzinga; Clare E Simpson; Nathaniel P Hoyle; Kathryn L Bailey; Susan G Campbell; Mark P Ashe
Journal:  Cell Rep       Date:  2014-10-23       Impact factor: 9.423

7.  The volumes and transcript counts of single cells reveal concentration homeostasis and capture biological noise.

Authors:  Hermannus Kempe; Anne Schwabe; Frédéric Crémazy; Pernette J Verschure; Frank J Bruggeman
Journal:  Mol Biol Cell       Date:  2014-12-17       Impact factor: 4.138

8.  mRNA detection in budding yeast with single fluorophores.

Authors:  Gable M Wadsworth; Rasesh Y Parikh; John S Choy; Harold D Kim
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

9.  The Wg and Dpp morphogens regulate gene expression by modulating the frequency of transcriptional bursts.

Authors:  Rachael Bakker; Madhav Mani; Richard W Carthew
Journal:  Elife       Date:  2020-06-22       Impact factor: 8.140

10.  The Lsm1-7/Pat1 complex binds to stress-activated mRNAs and modulates the response to hyperosmotic shock.

Authors:  Elena Garre; Vicent Pelechano; Manuel Sánchez Del Pino; Paula Alepuz; Per Sunnerhagen
Journal:  PLoS Genet       Date:  2018-07-30       Impact factor: 5.917

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