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Literature DB >> 20944589

Taking the measure of the methylome.

Abstract

Two comparative studies from the International Human Epigenome Project find high concordance between different methods for measuring genomic methylation.

Entities: Species

Mesh：

Year: 2010 PMID： 20944589 DOI： 10.1038/nbt1010-1026

Source DB: PubMed Journal: Nat Biotechnol ISSN： 1087-0156 Impact factor: 54.908

9 in total

1. Tackling the epigenome: challenges and opportunities for collaboration.

Authors: John S Satterlee; Dirk Schübeler; Huck-Hui Ng
Journal: Nat Biotechnol Date: 2010-10 Impact factor: 54.908

Review 2. Epigenetic modifications in pluripotent and differentiated cells.

Authors: Alexander Meissner
Journal: Nat Biotechnol Date: 2010-10 Impact factor: 54.908

3. Continuous base identification for single-molecule nanopore DNA sequencing.

Authors: James Clarke; Hai-Chen Wu; Lakmal Jayasinghe; Alpesh Patel; Stuart Reid; Hagan Bayley
Journal: Nat Nanotechnol Date: 2009-02-22 Impact factor: 39.213

4. Protocol matters: which methylome are you actually studying?

Authors: Mark D Robinson; Aaron L Statham; Terence P Speed; Susan J Clark
Journal: Epigenomics Date: 2010-08 Impact factor: 4.778

5. A blueprint for a Human Epigenome Project: the AACR Human Epigenome Workshop.

Authors: Peter A Jones; Robert Martienssen
Journal: Cancer Res Date: 2005-12-15 Impact factor: 12.701

6. The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.

Authors: Yun Huang; William A Pastor; Yinghua Shen; Mamta Tahiliani; David R Liu; Anjana Rao
Journal: PLoS One Date: 2010-01-26 Impact factor: 3.240

7. Direct detection of DNA methylation during single-molecule, real-time sequencing.

Authors: Benjamin A Flusberg; Dale R Webster; Jessica H Lee; Kevin J Travers; Eric C Olivares; Tyson A Clark; Jonas Korlach; Stephen W Turner
Journal: Nat Methods Date: 2010-05-09 Impact factor: 28.547

8. Human DNA methylomes at base resolution show widespread epigenomic differences.

Authors: Ryan Lister; Mattia Pelizzola; Robert H Dowen; R David Hawkins; Gary Hon; Julian Tonti-Filippini; Joseph R Nery; Leonard Lee; Zhen Ye; Que-Minh Ngo; Lee Edsall; Jessica Antosiewicz-Bourget; Ron Stewart; Victor Ruotti; A Harvey Millar; James A Thomson; Bing Ren; Joseph R Ecker
Journal: Nature Date: 2009-10-14 Impact factor: 49.962

9. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Authors: R Alan Harris; Ting Wang; Cristian Coarfa; Raman P Nagarajan; Chibo Hong; Sara L Downey; Brett E Johnson; Shaun D Fouse; Allen Delaney; Yongjun Zhao; Adam Olshen; Tracy Ballinger; Xin Zhou; Kevin J Forsberg; Junchen Gu; Lorigail Echipare; Henriette O'Geen; Ryan Lister; Mattia Pelizzola; Yuanxin Xi; Charles B Epstein; Bradley E Bernstein; R David Hawkins; Bing Ren; Wen-Yu Chung; Hongcang Gu; Christoph Bock; Andreas Gnirke; Michael Q Zhang; David Haussler; Joseph R Ecker; Wei Li; Peggy J Farnham; Robert A Waterland; Alexander Meissner; Marco A Marra; Martin Hirst; Aleksandar Milosavljevic; Joseph F Costello
Journal: Nat Biotechnol Date: 2010-09-19 Impact factor: 54.908

9 in total

45 in total

Review 1. Epigenetics, epidemiology and mitochondrial DNA diseases.

Authors: Patrick F Chinnery; Hannah R Elliott; Gavin Hudson; David C Samuels; Caroline L Relton
Journal: Int J Epidemiol Date: 2012-01-28 Impact factor: 7.196

2. epiGBS: reference-free reduced representation bisulfite sequencing.

Authors: Thomas P van Gurp; Niels C A M Wagemaker; Björn Wouters; Philippine Vergeer; Joop N J Ouborg; Koen J F Verhoeven
Journal: Nat Methods Date: 2016-02-08 Impact factor: 28.547

Review 3. Characterising the epigenome as a key component of the fetal exposome in evaluating in utero exposures and childhood cancer risk.

Authors: Akram Ghantous; Hector Hernandez-Vargas; Graham Byrnes; Terence Dwyer; Zdenko Herceg
Journal: Mutagenesis Date: 2015-02-26 Impact factor: 3.000

Taking the measure of the methylome.

1. Tackling the epigenome: challenges and opportunities for collaboration.

Review 2. Epigenetic modifications in pluripotent and differentiated cells.

3. Continuous base identification for single-molecule nanopore DNA sequencing.

4. Protocol matters: which methylome are you actually studying?

5. A blueprint for a Human Epigenome Project: the AACR Human Epigenome Workshop.

6. The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.

7. Direct detection of DNA methylation during single-molecule, real-time sequencing.

8. Human DNA methylomes at base resolution show widespread epigenomic differences.

9. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Review 1. Epigenetics, epidemiology and mitochondrial DNA diseases.

2. epiGBS: reference-free reduced representation bisulfite sequencing.

Review 3. Characterising the epigenome as a key component of the fetal exposome in evaluating in utero exposures and childhood cancer risk.

4. Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling.

5. MBRidge: an accurate and cost-effective method for profiling DNA methylome at single-base resolution.

Review 6. Analysing and interpreting DNA methylation data.

Review 7. Epigenome-wide association studies for common human diseases.

Review 8. Emerging patterns of epigenomic variation.

9. Methylome analysis using MeDIP-seq with low DNA concentrations.

Review 10. Statistical and integrative system-level analysis of DNA methylation data.