Literature DB >> 20942439

Reconstitution of gloeobacter rhodopsin with echinenone: role of the 4-keto group.

Sergei P Balashov1, Eleonora S Imasheva, Ah Reum Choi, Kwang-Hwan Jung, Synnøve Liaaen-Jensen, Janos K Lanyi.   

Abstract

In previous work, we reconstituted salinixanthin, the C(40)-carotenoid acyl glycoside that serves as a light-harvesting antenna to the light-driven proton pump xanthorhodopsin, into a different protein, gloeobacter rhodopsin expressed in Escherichia coli, and demonstrated that it transfers energy to the retinal chromophore [Imasheva, E. S., et al. (2009) Biochemistry 48, 10948]. The key to binding of salinixanthin was the accommodation of its ring near the retinal β-ionone ring. Here we examine two questions. Do any of the native Gloeobacter carotenoids bind to gloeobacter rhodopsin, and does the 4-keto group of the ring play a role in binding? There is no salinixanthin in Gloeobacter violaceous, but a simpler carotenoid, echinenone, also with a 4-keto group but lacking the acyl glycoside, is present in addition to β-carotene and oscillol. We show that β-carotene does not bind to gloeobacter rhodopsin, but its 4-keto derivative, echinenone, does and functions as a light-harvesting antenna. This indicates that the 4-keto group is critical for carotenoid binding. Further evidence of this is the fact that salinixanthol, an analogue of salinixanthin in which the 4-keto group is reduced to hydroxyl, does not bind and is not engaged in energy transfer. According to the crystal structure of xanthorhodopsin, the ring of salinixanthin in the binding site is turned out of the plane of the polyene conjugated chain. A similar conformation is expected for echinenone in the gloeobacter rhodopsin. We suggest that the 4-keto group in salinixanthin and echinenone allows for the twisted conformation of the ring around the C6-C7 bond and probably is engaged in an interaction that locks the carotenoid in the binding site.

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Year:  2010        PMID: 20942439      PMCID: PMC2995442          DOI: 10.1021/bi1014166

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  36 in total

1.  Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

Authors:  O Béjà; L Aravind; E V Koonin; M T Suzuki; A Hadd; L P Nguyen; S B Jovanovich; C M Gates; R A Feldman; J L Spudich; E N Spudich; E F DeLong
Journal:  Science       Date:  2000-09-15       Impact factor: 47.728

2.  Novel Proteorhodopsin variants from the Mediterranean and Red Seas.

Authors:  Gazalah Sabehi; Ramon Massana; Joseph P Bielawski; Mira Rosenberg; Edward F Delong; Oded Béjà
Journal:  Environ Microbiol       Date:  2003-10       Impact factor: 5.491

3.  New C(40)-carotenoid acyl glycoside as principal carotenoid in Salinibacter ruber, an extremely halophilic eubacterium.

Authors:  Bjart Frode Lutnaes; Aharon Oren; Synnøve Liaaen-Jensen
Journal:  J Nat Prod       Date:  2002-09       Impact factor: 4.050

4.  Non-hydrogen bond interactions involving the methionine sulfur atom.

Authors:  D Pal; P Chakrabarti
Journal:  J Biomol Struct Dyn       Date:  2001-08

5.  Environmental genome shotgun sequencing of the Sargasso Sea.

Authors:  J Craig Venter; Karin Remington; John F Heidelberg; Aaron L Halpern; Doug Rusch; Jonathan A Eisen; Dongying Wu; Ian Paulsen; Karen E Nelson; William Nelson; Derrick E Fouts; Samuel Levy; Anthony H Knap; Michael W Lomas; Ken Nealson; Owen White; Jeremy Peterson; Jeff Hoffman; Rachel Parsons; Holly Baden-Tillson; Cynthia Pfannkoch; Yu-Hui Rogers; Hamilton O Smith
Journal:  Science       Date:  2004-03-04       Impact factor: 47.728

6.  Protein regulation of carotenoid binding; gatekeeper and locking amino acid residues in reaction centers of Rhodobacter sphaeroides.

Authors:  Aleksander W Roszak; Kimberley McKendrick; Alastair T Gardiner; Iain A Mitchell; Neil W Isaacs; Richard J Cogdell; Hideki Hashimoto; Harry A Frank
Journal:  Structure       Date:  2004-05       Impact factor: 5.006

7.  The crystal structure of a cyanobacterial water-soluble carotenoid binding protein.

Authors:  Cheryl A Kerfeld; Michael R Sawaya; Vishnu Brahmandam; Duilio Cascio; Kwok Ki Ho; Colleen C Trevithick-Sutton; David W Krogmann; Todd O Yeates
Journal:  Structure       Date:  2003-01       Impact factor: 5.006

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

9.  Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin.

Authors:  Wei-Wu Wang; Oleg A Sineshchekov; Elena N Spudich; John L Spudich
Journal:  J Biol Chem       Date:  2003-06-23       Impact factor: 5.157

10.  Reconstitution of Biological Molecular generators of electric current. Bacteriorhodopsin.

Authors:  L A Drachev; V N Frolov; A D Kaulen; E A Liberman; S A Ostroumov; V G Plakunova; A Y Semenov; V P Skulachev
Journal:  J Biol Chem       Date:  1976-11-25       Impact factor: 5.157

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  18 in total

1.  Diversity, Mechanism, and Optogenetic Application of Light-Driven Ion Pump Rhodopsins.

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Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

2.  acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively Synthesized Retinal.

Authors:  Jeffrey R Dwulit-Smith; Joshua J Hamilton; David M Stevenson; Shaomei He; Ben O Oyserman; Francisco Moya-Flores; Sarahi L Garcia; Daniel Amador-Noguez; Katherine D McMahon; Katrina T Forest
Journal:  Appl Environ Microbiol       Date:  2018-11-30       Impact factor: 4.792

3.  Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage.

Authors:  Trevor W Ghylin; Sarahi L Garcia; Francisco Moya; Ben O Oyserman; Patrick Schwientek; Katrina T Forest; James Mutschler; Jeffrey Dwulit-Smith; Leong-Keat Chan; Manuel Martinez-Garcia; Alexander Sczyrba; Ramunas Stepanauskas; Hans-Peter Grossart; Tanja Woyke; Falk Warnecke; Rex Malmstrom; Stefan Bertilsson; Katherine D McMahon
Journal:  ISME J       Date:  2014-08-05       Impact factor: 10.302

4.  Biochemical Analysis of Microbial Rhodopsins.

Authors:  Julia A Maresca; Jessica L Keffer; Kelsey J Miller
Journal:  Curr Protoc Microbiol       Date:  2016-05-06

Review 5.  Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Authors:  Jarone Pinhassi; Edward F DeLong; Oded Béjà; José M González; Carlos Pedrós-Alió
Journal:  Microbiol Mol Biol Rev       Date:  2016-09-14       Impact factor: 11.056

Review 6.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

7.  RubyACRs, nonalgal anion channelrhodopsins with highly red-shifted absorption.

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-01       Impact factor: 11.205

8.  Engineering a carotenoid-binding site in Dokdonia sp. PRO95 Na+-translocating rhodopsin by a single amino acid substitution.

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Journal:  Photosynth Res       Date:  2017-10-05       Impact factor: 3.573

9.  Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin.

Authors:  John Vollmers; Sonja Voget; Sascha Dietrich; Kathleen Gollnow; Maike Smits; Katja Meyer; Thorsten Brinkhoff; Meinhard Simon; Rolf Daniel
Journal:  PLoS One       Date:  2013-05-06       Impact factor: 3.240

10.  Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein.

Authors:  Thomas Riedel; Laura Gómez-Consarnau; Jürgen Tomasch; Madeleine Martin; Michael Jarek; José M González; Stefan Spring; Meike Rohlfs; Thorsten Brinkhoff; Heribert Cypionka; Markus Göker; Anne Fiebig; Johannes Klein; Alexander Goesmann; Jed A Fuhrman; Irene Wagner-Döbler
Journal:  PLoS One       Date:  2013-03-04       Impact factor: 3.240

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