Literature DB >> 20941019

Measuring and imaging diffusion with multiple scan speed image correlation spectroscopy.

Nadine Gröner1, Jérémie Capoulade, Christoph Cremer, Malte Wachsmuth.   

Abstract

The intracellular mobility of biomolecules is determined by transport and diffusion as well as molecular interactions and is crucial for many processes in living cells. Methods of fluorescence microscopy like confocal laser scanning microscopy (CLSM) can be used to characterize the intracellular distribution of fluorescently labeled biomolecules. Fluorescence correlation spectroscopy (FCS) is used to describe diffusion, transport and photo-physical processes quantitatively. As an alternative to FCS, spatially resolved measurements of mobilities can be implemented using a CLSM by utilizing the spatio-temporal information inscribed into the image by the scan process, referred to as raster image correlation spectroscopy (RICS). Here we present and discuss an extended approach, multiple scan speed image correlation spectroscopy (msICS), which benefits from the advantages of RICS, i.e. the use of widely available instrumentation and the extraction of spatially resolved mobility information, without the need of a priori knowledge of diffusion properties. In addition, msICS covers a broad dynamic range, generates correlation data comparable to FCS measurements, and allows to derive two-dimensional maps of diffusion coefficients. We show the applicability of msICS to fluorophores in solution and to free EGFP in living cells.

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Year:  2010        PMID: 20941019     DOI: 10.1364/OE.18.021225

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  14 in total

1.  Dissecting chromatin interactions in living cells from protein mobility maps.

Authors:  Fabian Erdel; Katharina Müller-Ott; Michael Baum; Malte Wachsmuth; Karsten Rippe
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

2.  Quantitative fluorescence imaging of protein diffusion and interaction in living cells.

Authors:  Jérémie Capoulade; Malte Wachsmuth; Lars Hufnagel; Michael Knop
Journal:  Nat Biotechnol       Date:  2011-08-07       Impact factor: 54.908

3.  Analysis of molecular movement reveals latticelike obstructions to diffusion in heart muscle cells.

Authors:  Ardo Illaste; Martin Laasmaa; Pearu Peterson; Marko Vendelin
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

4.  Fluorescence Correlation Spectroscopy with Photobleaching Correction in Slowly Diffusing Systems.

Authors:  Cameron Hodges; Rudra P Kafle; J Damon Hoff; Jens-Christian Meiners
Journal:  J Fluoresc       Date:  2018-01-24       Impact factor: 2.217

5.  Visualization of barriers and obstacles to molecular diffusion in live cells by spatial pair-cross-correlation in two dimensions.

Authors:  Leonel Malacrida; Per Niklas Hedde; Suman Ranjit; Francesco Cardarelli; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2017-12-20       Impact factor: 3.732

6.  Raster Image Correlation Spectroscopy Performance Evaluation.

Authors:  Marco Longfils; Nick Smisdom; Marcel Ameloot; Mats Rudemo; Veerle Lemmens; Guillermo Solís Fernández; Magnus Röding; Niklas Lorén; Jelle Hendrix; Aila Särkkä
Journal:  Biophys J       Date:  2019-10-10       Impact factor: 4.033

7.  Cellular response to heat shock studied by multiconfocal fluorescence correlation spectroscopy.

Authors:  Meike Kloster-Landsberg; Gaëtan Herbomel; Irène Wang; Jacques Derouard; Claire Vourc'h; Yves Usson; Catherine Souchier; Antoine Delon
Journal:  Biophys J       Date:  2012-09-19       Impact factor: 4.033

8.  Quantifying transient binding of ISWI chromatin remodelers in living cells by pixel-wise photobleaching profile evolution analysis.

Authors:  Fabian Erdel; Karsten Rippe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

9.  Raster image cross-correlation analysis for spatiotemporal visualization of intracellular degradation activities against exogenous DNAs.

Authors:  Akira Sasaki; Johtaro Yamamoto; Takashi Jin; Masataka Kinjo
Journal:  Sci Rep       Date:  2015-09-24       Impact factor: 4.379

10.  Probing short-range protein Brownian motion in the cytoplasm of living cells.

Authors:  Carmine Di Rienzo; Vincenzo Piazza; Enrico Gratton; Fabio Beltram; Francesco Cardarelli
Journal:  Nat Commun       Date:  2014-12-23       Impact factor: 14.919

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