Literature DB >> 20939998

Interactions of cytochrome P450s with their ligands.

Kip P Conner1, Caleb M Woods, William M Atkins.   

Abstract

Cytochrome P450s (CYPs) are heme-containing monooxygenases that contribute to an enormous range of enzymatic function including biosynthetic and detoxification roles. This review summarizes recent studies concerning interactions of CYPs with ligands including substrates, inhibitors, and diatomic heme-ligating molecules. These studies highlight the complexity in the relationship between the heme spin state and active site occupancy, the roles of water in directing protein-ligand and ligand-heme interactions, and the details of interactions between heme and gaseous diatomic CYP ligands. Both kinetic and thermodynamic aspects of ligand binding are considered.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20939998      PMCID: PMC3041843          DOI: 10.1016/j.abb.2010.10.006

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  103 in total

Review 1.  Structural biology of heme monooxygenases.

Authors:  Thomas L Poulos
Journal:  Biochem Biophys Res Commun       Date:  2005-09-13       Impact factor: 3.575

2.  Inhibition of cytochrome P450 3A4 by a pyrimidineimidazole: Evidence for complex heme interactions.

Authors:  J Matthew Hutzler; Roger J Melton; Jeanne M Rumsey; Mark E Schnute; Charles W Locuson; Larry C Wienkers
Journal:  Chem Res Toxicol       Date:  2006-12       Impact factor: 3.739

3.  Conformational flexibility of mammalian cytochrome P450 2B4 in binding imidazole inhibitors with different ring chemistry and side chains. Solution thermodynamics and molecular modeling.

Authors:  B K Muralidhara; Surendra Negi; Christopher C Chin; Werner Braun; James R Halpert
Journal:  J Biol Chem       Date:  2006-01-26       Impact factor: 5.157

4.  Kinetics and thermodynamics of ligand binding by cytochrome P450 3A4.

Authors:  Emre M Isin; F Peter Guengerich
Journal:  J Biol Chem       Date:  2006-02-08       Impact factor: 5.157

5.  Time-resolved fluorescence studies of heterotropic ligand binding to cytochrome P450 3A4.

Authors:  Jed N Lampe; William M Atkins
Journal:  Biochemistry       Date:  2006-10-10       Impact factor: 3.162

Review 6.  Functional interaction of nitrogenous organic bases with cytochrome P450: a critical assessment and update of substrate features and predicted key active-site elements steering the access, binding, and orientation of amines.

Authors:  Peter Hlavica
Journal:  Biochim Biophys Acta       Date:  2006-02-10

7.  The ferrous-dioxygen intermediate in human cytochrome P450 3A4. Substrate dependence of formation and decay kinetics.

Authors:  Ilia G Denisov; Yelena V Grinkova; Bradley J Baas; Stephen G Sligar
Journal:  J Biol Chem       Date:  2006-06-08       Impact factor: 5.157

8.  Surface plasmon resonance analysis of antifungal azoles binding to CYP3A4 with kinetic resolution of multiple binding orientations.

Authors:  Josh T Pearson; John J Hill; Jennifer Swank; Nina Isoherranen; Kent L Kunze; William M Atkins
Journal:  Biochemistry       Date:  2006-05-23       Impact factor: 3.162

9.  The role of Thr268 and Phe393 in cytochrome P450 BM3.

Authors:  Jonathan P Clark; Caroline S Miles; Christopher G Mowat; Malcolm D Walkinshaw; Graeme A Reid; Simon N Daff; Stephen K Chapman
Journal:  J Inorg Biochem       Date:  2006-01-05       Impact factor: 4.155

10.  CAVER: a new tool to explore routes from protein clefts, pockets and cavities.

Authors:  Martin Petrek; Michal Otyepka; Pavel Banás; Pavlína Kosinová; Jaroslav Koca; Jirí Damborský
Journal:  BMC Bioinformatics       Date:  2006-06-22       Impact factor: 3.169

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  19 in total

Review 1.  Potentiation of hydrogen peroxide toxicity: From catalase inhibition to stable DNA-iron complexes.

Authors:  Tulip Mahaseth; Andrei Kuzminov
Journal:  Mutat Res Rev Mutat Res       Date:  2016-08-30       Impact factor: 5.657

2.  Peripheral ligand-binding site in cytochrome P450 3A4 located with fluorescence resonance energy transfer (FRET).

Authors:  Dmitri R Davydov; Jessica A O Rumfeldt; Elena V Sineva; Harshica Fernando; Nadezhda Y Davydova; James R Halpert
Journal:  J Biol Chem       Date:  2011-12-22       Impact factor: 5.157

3.  Conformational Response of N-Terminally Truncated Cytochrome P450 3A4 to Ligand Binding in Solution.

Authors:  Shih-Wei Chuo; Shu-Hao Liou; Lee-Ping Wang; R David Britt; Thomas L Poulos; Irina F Sevrioukova; David B Goodin
Journal:  Biochemistry       Date:  2019-09-06       Impact factor: 3.162

4.  Binding of a physiological substrate causes large-scale conformational reorganization in cytochrome P450 51.

Authors:  Tatiana Y Hargrove; Zdzislaw Wawrzak; Paxtyn M Fisher; Stella A Child; W David Nes; F Peter Guengerich; Michael R Waterman; Galina I Lepesheva
Journal:  J Biol Chem       Date:  2018-10-16       Impact factor: 5.157

5.  Cytochrome P450 2AA molecular clone, expression pattern, and different regulation by fish oil and lard oil in diets of grass carp (Ctenopharyngodon idella).

Authors:  Xiao-Chen Shi; Jian Sun; Ai Jin; Hong Ji; Hai-Bo Yu; Yang Li; Xue-Xian Li; Pin Liu; Chao Li; Ji-Qin Huang
Journal:  Fish Physiol Biochem       Date:  2018-05-03       Impact factor: 2.794

6.  Conformational selection is present in ligand binding to cytochrome P450 19A1 lipoprotein nanodiscs.

Authors:  Francisco Zárate-Pérez; John C Hackett
Journal:  J Inorg Biochem       Date:  2020-05-21       Impact factor: 4.155

7.  Membrane-embedded substrate recognition by cytochrome P450 3A4.

Authors:  John C Hackett
Journal:  J Biol Chem       Date:  2018-01-30       Impact factor: 5.157

8.  Development of NanoART for HIV Treatment: Minding the Cytochrome P450 (CYP) Enzymes.

Authors:  Narasimha M Midde; Santosh Kumar
Journal:  J Pers Nanomed       Date:  2015-09-10

9.  Functional studies of N-terminally modified CYP2J2 epoxygenase in model lipid bilayers.

Authors:  Daniel R McDougle; Amrita Palaria; Eric Magnetta; Daryl D Meling; Aditi Das
Journal:  Protein Sci       Date:  2013-07       Impact factor: 6.725

10.  Membrane Interactions, Ligand-Dependent Dynamics, and Stability of Cytochrome P4503A4 in Lipid Nanodiscs.

Authors:  Nicholas A Treuheit; Michelle Redhair; Hyewon Kwon; Wynton D McClary; Miklos Guttman; John P Sumida; William M Atkins
Journal:  Biochemistry       Date:  2016-02-08       Impact factor: 3.162

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