Literature DB >> 20935097

Genome sequence of the polysaccharide-degrading, thermophilic anaerobe Spirochaeta thermophila DSM 6192.

Angel Angelov1, Susanne Liebl, Meike Ballschmiter, Mechthild Bömeke, Rüdiger Lehmann, Heiko Liesegang, Rolf Daniel, Wolfgang Liebl.   

Abstract

Spirochaeta thermophila is a thermophilic, free-living anaerobe that is able to degrade various α- and β-linked sugar polymers, including cellulose. We report here the complete genome sequence of S. thermophila DSM 6192, which is the first genome sequence of a thermophilic, free-living member of the Spirochaetes phylum. The genome data reveal a high density of genes encoding enzymes from more than 30 glycoside hydrolase families, a noncellulosomal enzyme system for (hemi)cellulose degradation, and indicate the presence of a novel carbohydrate-binding module.

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Year:  2010        PMID： 20935097      PMCID： PMC3008529          DOI： 10.1128/JB.01023-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

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Authors:  Maike Tech; Rainer Merkl
Journal:  In Silico Biol       Date:  2003

Review 3.  Energy conservation via electron-transferring flavoprotein in anaerobic bacteria.

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5.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Glucose catabolism by Spirochaeta thermophila RI 19.B1.

Authors:  P H Janssen; H W Morgan
Journal:  J Bacteriol       Date:  1992-04       Impact factor: 3.490

7.  The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features.

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-24       Impact factor: 11.205

8.  The iron-hydrogenase of Thermotoga maritima utilizes ferredoxin and NADH synergistically: a new perspective on anaerobic hydrogen production.

Authors:  Gerrit J Schut; Michael W W Adams
Journal:  J Bacteriol       Date:  2009-05-01       Impact factor: 3.490

9.  The Pfam protein families database.

Authors:  Robert D Finn; John Tate; Jaina Mistry; Penny C Coggill; Stephen John Sammut; Hans-Rudolf Hotz; Goran Ceric; Kristoffer Forslund; Sean R Eddy; Erik L L Sonnhammer; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2007-11-26       Impact factor: 16.971

10.  A probabilistic model of local sequence alignment that simplifies statistical significance estimation.

Authors:  Sean R Eddy
Journal:  PLoS Comput Biol       Date:  2008-05-30       Impact factor: 4.475
  10 in total
  8 in total

1.  Novel family of carbohydrate-binding modules revealed by the genome sequence of Spirochaeta thermophila DSM 6192.

Authors:  Angel Angelov; Christoph Loderer; Susanne Pompei; Wolfgang Liebl
Journal:  Appl Environ Microbiol       Date:  2011-06-17       Impact factor: 4.792

2.  Translational Frameshifting in the chlD Gene Gives a Clue to the Coevolution of the Chlorophyll and Cobalamin Biosyntheses.

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Journal:  Microorganisms       Date:  2022-06-11

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Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-12       Impact factor: 11.205

4.  A novel highly thermostable xylanase stimulated by Ca2+ from Thermotoga thermarum: cloning, expression and characterization.

Authors:  Hao Shi; Yu Zhang; Xun Li; Yingjuan Huang; Liangliang Wang; Ye Wang; Huaihai Ding; Fei Wang
Journal:  Biotechnol Biofuels       Date:  2013-02-18       Impact factor: 6.040

5.  Molecular analysis of hyperthermophilic endoglucanase Cel12B from Thermotoga maritima and the properties of its functional residues.

Authors:  Hao Shi; Yu Zhang; Liangliang Wang; Xun Li; Wenqian Li; Fei Wang; Xiangqian Li
Journal:  BMC Struct Biol       Date:  2014-02-17

6.  Evolution and functional characterization of CAZymes belonging to subfamily 10 of glycoside hydrolase family 5 (GH5_10) in two species of phytophagous beetles.

Authors:  André Busch; Grit Kunert; David G Heckel; Yannick Pauchet
Journal:  PLoS One       Date:  2017-08-30       Impact factor: 3.240

7.  In silico analysis of the α-amylase family GH57: eventual subfamilies reflecting enzyme specificities.

Authors:  Mária Martinovičová; Štefan Janeček
Journal:  3 Biotech       Date:  2018-07-09       Impact factor: 2.406

8.  Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere.

Authors:  Devin F R Doud; Robert M Bowers; Frederik Schulz; Markus De Raad; Kai Deng; Angela Tarver; Evan Glasgow; Kirk Vander Meulen; Brian Fox; Sam Deutsch; Yasuo Yoshikuni; Trent Northen; Brian P Hedlund; Steven W Singer; Natalia Ivanova; Tanja Woyke
Journal:  ISME J       Date:  2019-11-21       Impact factor: 10.302
  8 in total

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