Literature DB >> 20926286

Genomics and systems approaches in the mammalian circadian clock.

Julie E Baggs1, John B Hogenesch.   

Abstract

The circadian clock is an endogenous oscillator that regulates daily rhythms in behavior and physiology. In recent years, systems biology and genomics approaches re-shaped our view of the clock. Our understanding of outputs that regulate behavior and physiology has been enhanced through gene expression profiling and proteomic analyses. Systems approaches uncovered underlying principles of transcriptional regulation and robustness of the oscillator through perturbation analysis and synthetic methods. Finally, new clock components and modifiers were identified through cell-based screening efforts and proteomics.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20926286      PMCID: PMC2982940          DOI: 10.1016/j.gde.2010.08.009

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  58 in total

Review 1.  Coordination of circadian timing in mammals.

Authors:  Steven M Reppert; David R Weaver
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

Review 2.  Post-translational modifications regulate the ticking of the circadian clock.

Authors:  Monica Gallego; David M Virshup
Journal:  Nat Rev Mol Cell Biol       Date:  2007-02       Impact factor: 94.444

3.  Circadian proteomics of the mouse retina.

Authors:  Takahiro Tsuji; Tsuyoshi Hirota; Nobuaki Takemori; Naoka Komori; Hikari Yoshitane; Masafumi Fukuda; Hiroyuki Matsumoto; Yoshitaka Fukada
Journal:  Proteomics       Date:  2007-10       Impact factor: 3.984

4.  The orphan nuclear receptor RORalpha regulates circadian transcription of the mammalian core-clock Bmal1.

Authors:  Makoto Akashi; Toru Takumi
Journal:  Nat Struct Mol Biol       Date:  2005-04-10       Impact factor: 15.369

5.  A genome-wide RNAi screen for modifiers of the circadian clock in human cells.

Authors:  Eric E Zhang; Andrew C Liu; Tsuyoshi Hirota; Loren J Miraglia; Genevieve Welch; Pagkapol Y Pongsawakul; Xianzhong Liu; Ann Atwood; Jon W Huss; Jeff Janes; Andrew I Su; John B Hogenesch; Steve A Kay
Journal:  Cell       Date:  2009-09-17       Impact factor: 41.582

6.  Identification of RACK1 and protein kinase Calpha as integral components of the mammalian circadian clock.

Authors:  Maria S Robles; Cyril Boyault; Darko Knutti; Kiran Padmanabhan; Charles J Weitz
Journal:  Science       Date:  2010-01-22       Impact factor: 47.728

7.  Histone acetyltransferase-dependent chromatin remodeling and the vascular clock.

Authors:  Anne M Curtis; Sang-beom Seo; Elizabeth J Westgate; Radu Daniel Rudic; Emer M Smyth; Debabrata Chakravarti; Garret A FitzGerald; Peter McNamara
Journal:  J Biol Chem       Date:  2003-11-26       Impact factor: 5.157

8.  Positional cloning of the mouse circadian clock gene.

Authors:  D P King; Y Zhao; A M Sangoram; L D Wilsbacher; M Tanaka; M P Antoch; T D Steeves; M H Vitaterna; J M Kornhauser; P L Lowrey; F W Turek; J S Takahashi
Journal:  Cell       Date:  1997-05-16       Impact factor: 41.582

9.  CKIepsilon/delta-dependent phosphorylation is a temperature-insensitive, period-determining process in the mammalian circadian clock.

Authors:  Yasushi Isojima; Masato Nakajima; Hideki Ukai; Hiroshi Fujishima; Rikuhiro G Yamada; Koh-hei Masumoto; Reiko Kiuchi; Mayumi Ishida; Maki Ukai-Tadenuma; Yoichi Minami; Ryotaku Kito; Kazuki Nakao; Wataru Kishimoto; Seung-Hee Yoo; Kazuhiro Shimomura; Toshifumi Takao; Atsuko Takano; Toshio Kojima; Katsuya Nagai; Yoshiyuki Sakaki; Joseph S Takahashi; Hiroki R Ueda
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-02       Impact factor: 11.205

10.  Modeling an evolutionary conserved circadian cis-element.

Authors:  Eric R Paquet; Guillaume Rey; Felix Naef
Journal:  PLoS Comput Biol       Date:  2008-02       Impact factor: 4.475

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  13 in total

1.  USP2a protein deubiquitinates and stabilizes the circadian protein CRY1 in response to inflammatory signals.

Authors:  Xin Tong; Katie Buelow; Anirvan Guha; Rebecca Rausch; Lei Yin
Journal:  J Biol Chem       Date:  2012-06-05       Impact factor: 5.157

Review 2.  Circadian dysfunction may be a key component of the non-motor symptoms of Parkinson's disease: insights from a transgenic mouse model.

Authors:  L David Willison; Takashi Kudo; Dawn H Loh; Dika Kuljis; Christopher S Colwell
Journal:  Exp Neurol       Date:  2013-01-24       Impact factor: 5.330

3.  Identification of causal genes, networks, and transcriptional regulators of REM sleep and wake.

Authors:  Joshua Millstein; Christopher J Winrow; Andrew Kasarskis; Joseph R Owens; Lili Zhou; Keith C Summa; Karrie Fitzpatrick; Bin Zhang; Martha H Vitaterna; Eric E Schadt; John J Renger; Fred W Turek
Journal:  Sleep       Date:  2011-11-01       Impact factor: 5.849

4.  Pregnancy-induced changes in ultradian rhythms persist in circadian arrhythmic Siberian hamsters.

Authors:  Z Yan Wang; Erin J Cable; Irving Zucker; Brian J Prendergast
Journal:  Horm Behav       Date:  2014-05-02       Impact factor: 3.587

Review 5.  Circadian autophagy rhythm: a link between clock and metabolism?

Authors:  Di Ma; Siming Li; Matthew M Molusky; Jiandie D Lin
Journal:  Trends Endocrinol Metab       Date:  2012-04-18       Impact factor: 12.015

6.  Sleep and circadian dysfunction in neurodegenerative disorders: insights from a mouse model of Huntington's disease.

Authors:  Dika Kuljis; Analyne M Schroeder; Takashi Kudo; Dawn H Loh; David L Willison; Christopher S Colwell
Journal:  Minerva Pneumol       Date:  2012-09

Review 7.  Cellular Deconstruction: Finding Meaning in Individual Cell Variation.

Authors:  James Eberwine; Junhyong Kim
Journal:  Trends Cell Biol       Date:  2015-10       Impact factor: 20.808

Review 8.  When brain clocks lose track of time: cause or consequence of neuropsychiatric disorders.

Authors:  Jerome S Menet; Michael Rosbash
Journal:  Curr Opin Neurobiol       Date:  2011-07-05       Impact factor: 6.627

Review 9.  The role of circadian clocks in metabolic disease.

Authors:  Min-Dian Li; Chao-Min Li; Zhong Wang
Journal:  Yale J Biol Med       Date:  2012-09-25

10.  Geographical distribution of adolescent body height with respect to effective day length in Japan: an ecological analysis.

Authors:  Masana Yokoya; Hideyasu Shimizu; Yukito Higuchi
Journal:  PLoS One       Date:  2012-12-05       Impact factor: 3.240

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