| Literature DB >> 20920372 |
Sumana Mukherjee1, Mark J Roth, Sanford M Dawsey, Wusheng Yan, Jaime Rodriguez-Canales, Heidi S Erickson, Nan Hu, Alisa M Goldstein, Philip R Taylor, Annely M Richardson, Michael A Tangrea, Rodrigo F Chuaqui, Michael R Emmert-Buck.
Abstract
BACKGROUND: Esophageal squamous cell carcinomas (ESCC) are usually asymptomatic and go undetected until they are incurable. Cytological screening is one strategy to detect ESCC at an early stage and has shown promise in previous studies, although improvement in sensitivity and specificity are needed. Proteases modulate cancer progression by facilitating tumor invasion and metastasis. In the current study, matrix metalloproteinases (MMPs) were studied in a search for new early detection markers for ESCC.Entities:
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Year: 2010 PMID: 20920372 PMCID: PMC2958908 DOI: 10.1186/1479-5876-8-91
Source DB: PubMed Journal: J Transl Med ISSN: 1479-5876 Impact factor: 5.531
Clinical data
| No. | Age | Sex | Smoking | Alcohol | Diagnosis | Tumor stage | Tumor grade | LN metastasis |
|---|---|---|---|---|---|---|---|---|
| 1 | 55 | Female | No | No | SCC | 1 | 2 | Yes |
| 2 | 56 | Male | Yes | Yes | SCC | 3 | 1 | Yes |
| 3 | 55 | Male | Yes | No | SCC | 2 | 2 | Yes |
| 4 | 61 | Male | No | No | SCC | 3 | 2 | Yes |
| 5 | 52 | Male | Yes | No | SCC | 2 | 1 | Yes |
| 6 | 48 | Female | Yes | No | SCC | 3 | 2 | No |
| 7 | missing | SCC | missing | |||||
| 8 | missing | SCC | missing | |||||
| 9 | 67 | Female | Yes | No | SCC | 3 | 3 | Yes |
| 10 | missing | SCC | missing | |||||
| 11 | 65 | Female | No | No | SCC | 2 | 1 | No |
| 12 | 51 | Male | Yes | No | SCC | 3 | 2 | No |
| 13 | 56 | Female | No | No | SCC | 3 | 2 | Yes |
| 14 | 50 | Male | Yes | No | SCC | 2 | 3 | Yes |
| 15 | missing | SCC | missing | |||||
| 16 | 40 | Male | Yes | No | SCC | 3 | 2 | Yes |
| 17 | 62 | Female | Yes | No | SCC | 3 | 2 | No |
| 18 | 63 | Male | No | No | SCC | 3 | 1 | No |
| 19 | 70 | Male | Yes | No | SCC | 3 | 2 | No |
| 20 | 62 | Male | Yes | No | SCC | 3 | 2 | No |
| 21 | missing | SCC | missing | |||||
| 22 | 68 | Male | Yes | No | SCC | 3 | 2 | Yes |
| 23 | 63 | Male | Yes | No | SCC | 3 | 2 | No |
| 24 | 61 | Male | Yes | No | SCC | 3 | 2 | No |
Figure 1Determination of MMP Levels. (A) Zymogram measurement of MMPs in matched normal esophagus (N) and ESCC (T) in four cases. (B) Zymogram measurement of MMPs in the epithelial (TEp) and stromal (TSt) compartments in ESCC after procurement by LCM.
RNA preparation and assessment
| Case | Histology | LCM shots | Nano-drop (ηg/μl) | RIN |
|---|---|---|---|---|
| 1 | Normal Epithelium | 4000 | 14.2 | 6.1 |
| Normal Stroma | 5000 | 11.5 | 2.7 | |
| Tumor Epithelium | 4500 | 23.1 | 4.8 | |
| Tumor Stroma | 10000 | 45.5 | 3.7 | |
| 2 | Normal Epithelium | 3000 | 2.0 | 5.0 |
| Normal Stroma | 6000 | 2.2 | 7.3 | |
| Tumor Epithelium | 3000 | 2 | 6.5 | |
| Tumor Stroma | 6000 | 1 | 4.1 | |
| 3 | Normal Epithelium | 3000 | 3.63 | 4.1 |
| Normal Stroma | 5000 | 5.06 | 7.0 | |
| Tumor Epithelium | 3000 | 3.02 | 7.0 | |
| Tumor Stroma | 5000 | 5.67 | 6.2 | |
| 4 | Normal Epithelium | 3000 | 5.08 | 4.7 |
| Normal Stroma | 2000 | 1.28 | 7.4 | |
| Tumor Epithelium | 3000 | 4.37 | 8.0 | |
| Tumor Stroma | 4000 | 2.05 | 5.9 | |
| 5 | Normal Epithelium | 2500 | 2.34 | 7.0 |
| Normal Stroma | 4000 | 2.19 | 6.5 | |
| Tumor Epithelium | 2500 | 2.57 | 5.8 | |
| Tumor Stroma | 3000 | 1.76 | 5.8 |
Gene expression comparison of normal epithelium versus tumor cells, and normal stroma versus tumor stroma
| Case | Sample | Detector | Avg.Ct | St. Dev | ΔCtN | Sample | Av.Ct | St. dev | ΔCtT | ΔΔCt | 2^-ΔΔCt |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NE | MMP3 | 39.59 | 17.86 | TE | 25.50 | 0.108 | 5.37 | -12.48 | ↑ | |
| NE | MMP10 | 38.59 | 3.43 | 16.85 | TE | 21.39 | 0.07 | 1.25 | -15.59 | ↑ | |
| NE | ACTB | 21.73 | 0.22 | TE | 20.13 | 0.03 | |||||
| NS | MMP3 | 36.20 | 0.75 | 15.77 | TS | 28.79 | 0.19 | 9.3 | -6.47 | ↑ | |
| NS | MMP10 | 35.38 | 0.75 | 14.95 | TS | 22.35 | 0.07 | 2.85 | -12.09 | ↑ | |
| NS | ACTB | 20.43 | 0.06 | TS | 19.49 | 0.04 | |||||
| 2 | NE | MMP3 | 39.54 | 13.77 | TE | 39.87 | 12.29 | -1.48 | ↑ | ||
| NE | MMP10 | 38.68 | 12.92 | TE | 30.25 | 0.02 | 2.66 | -10.25 | ↑ | ||
| NE | ACTB | 25.76 | 0.166 | TE | 27.58 | 0.22 | |||||
| NS | MMP3 | 39.97 | 15.03 | TS | 32.58 | 0.42 | 4.21 | -10.82 | ↑ | ||
| NS | MMP10 | UD | TS | 31.02 | 0.17 | 2.65 | OFF-N, ON-T | ↑ | |||
| NS | ACTB | 24.93 | 0.051 | TS | 28.36 | 0.159 | |||||
| 3 | NE | MMP3 | UD | TE | 38.51 | 1.49 | 14.13 | OFF-N, ON-T | ↑ | ||
| NE | MMP10 | UD | TE | 31.93 | 0.257 | 7.55 | OFF-N, ON-T | ↑ | |||
| NE | ACTB | 23.45 | 0.058 | TE | 24.38 | 0.07 | |||||
| NS | MMP3 | UD | TS | 36.23 | 1.1 | 11.44 | OFF-N, ON-T | ↑ | |||
| NS | MMP10 | UD | TS | 34.13 | 0.80 | 9.34 | OFF-N, ON-T | ↑ | |||
| NS | ACTB | 24.40 | 0.016 | TS | 24.79 | 0.07 | |||||
| 4 | NE | MMP3 | UD | TE | 31.89 | 0.174 | OFF-N, ON-T | ↑ | |||
| NE | MMP10 | 39.42 | 15.99 | TE | 27.00 | 0.03 | 4.59 | -11.40 | ↑ | ||
| NE | ACTB | 23.43 | 0.056 | TE | 22.41 | 0.033 | |||||
| NS | MMP3 | 38.95 | 15.91 | TS | 29.61 | 0.108 | 5.24 | -10.66 | ↑ | ||
| NS | MMP10 | 39.1 | 16.06 | TS | 27.69 | 0.118 | 3.32 | -12.73 | ↑ | ||
| NS | ACTB | 23.03 | 0.095 | TS | 24.36 | 0.05 | |||||
| 5 | NE | MMP3 | UD | TE | 29.94 | 0.172 | OFF-N, ON-T | ↑ | |||
| NE | MMP10 | UD | TE | 30.28 | 0.209 | OFF-N, ON-T | ↑ | ||||
| NE | ACTB | 25.31 | 0.073 | TE | 25.08 | 0.048 | |||||
| NS | MMP3 | 39.65 | 16.22 | TS | 32.59 | 0.334 | 4.81 | -11.40 | ↑ | ||
| NS | MMP10 | 39.38 | 15.95 | TS | 33.01 | 0.451 | 5.23 | -10.72 | ↑ | ||
| NS | ACTB | 23.43 | 0.0013 | TS | 27.78 | 0.0911 |
NE, normal epithelium; NS, normal stroma; TE, tumor epithelium; TS, tumor stroma.