Literature DB >> 20888479

3D visualization of HIV virions by cryoelectron tomography.

Jun Liu1, Elizabeth R Wright, Hanspeter Winkler.   

Abstract

The structure of the human immunodeficiency virus (HIV) and some of its components have been difficult to study in three-dimensions (3D) primarily because of their intrinsic structural variability. Recent advances in cryoelectron tomography (cryo-ET) have provided a new approach for determining the 3D structures of the intact virus, the HIV capsid, and the envelope glycoproteins located on the viral surface. A number of cryo-ET procedures related to specimen preservation, data collection, and image processing are presented in this chapter. The techniques described herein are well suited for determining the ultrastructure of bacterial and viral pathogens and their associated molecular machines in situ at nanometer resolution.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20888479      PMCID: PMC3056484          DOI: 10.1016/S0076-6879(10)83014-9

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  76 in total

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Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Image reconstructions of helical assemblies of the HIV-1 CA protein.

Authors:  S Li; C P Hill; W I Sundquist; J T Finch
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

3.  Three-dimensional structure of herpes simplex virus from cryo-electron tomography.

Authors:  Kay Grünewald; Prashant Desai; Dennis C Winkler; J Bernard Heymann; David M Belnap; Wolfgang Baumeister; Alasdair C Steven
Journal:  Science       Date:  2003-11-21       Impact factor: 47.728

4.  Automated microscopy for electron tomography.

Authors:  A J Koster; H Chen; J W Sedat; D A Agard
Journal:  Ultramicroscopy       Date:  1992-10       Impact factor: 2.689

5.  3D reconstruction and processing of volumetric data in cryo-electron tomography.

Authors:  Hanspeter Winkler
Journal:  J Struct Biol       Date:  2006-08-11       Impact factor: 2.867

6.  Morphopoietic determinants of HIV-1 Gag particles assembled in baculovirus-infected cells.

Authors:  B Gay; J Tournier; N Chazal; C Carrière; P Boulanger
Journal:  Virology       Date:  1998-08-01       Impact factor: 3.616

7.  Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography.

Authors:  Friedrich Förster; Ohad Medalia; Nathan Zauberman; Wolfgang Baumeister; Deborah Fass
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-17       Impact factor: 11.205

8.  Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120.

Authors:  Lei Chen; Young Do Kwon; Tongqing Zhou; Xueling Wu; Sijy O'Dell; Lisa Cavacini; Ann J Hessell; Marie Pancera; Min Tang; Ling Xu; Zhi-Yong Yang; Mei-Yun Zhang; James Arthos; Dennis R Burton; Dimiter S Dimitrov; Gary J Nabel; Marshall R Posner; Joseph Sodroski; Richard Wyatt; John R Mascola; Peter D Kwong
Journal:  Science       Date:  2009-11-20       Impact factor: 47.728

9.  Unique structures in a tumor herpesvirus revealed by cryo-electron tomography and microscopy.

Authors:  Wei Dai; Qingmei Jia; Eric Bortz; Sanket Shah; Jun Liu; Ivo Atanasov; Xudong Li; Kenneth A Taylor; Ren Sun; Z Hong Zhou
Journal:  J Struct Biol       Date:  2007-11-20       Impact factor: 2.867

10.  Structure of full-length HIV-1 CA: a model for the mature capsid lattice.

Authors:  Barbie K Ganser-Pornillos; Anchi Cheng; Mark Yeager
Journal:  Cell       Date:  2007-10-05       Impact factor: 41.582

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  14 in total

Review 1.  Viral vectors for gene delivery to the central nervous system.

Authors:  Thomas B Lentz; Steven J Gray; R Jude Samulski
Journal:  Neurobiol Dis       Date:  2011-10-07       Impact factor: 5.996

2.  The mechanism of DNA ejection in the Bacillus anthracis spore-binding phage 8a revealed by cryo-electron tomography.

Authors:  Xiaofeng Fu; Michael H Walter; Angel Paredes; Marc C Morais; Jun Liu
Journal:  Virology       Date:  2011-10-21       Impact factor: 3.616

3.  Electron tomography of paracrystalline 2D arrays.

Authors:  Hanspeter Winkler; Shenping Wu; Kenneth A Taylor
Journal:  Methods Mol Biol       Date:  2013

4.  Visualization of the type III secretion sorting platform of Shigella flexneri.

Authors:  Bo Hu; Dustin R Morado; William Margolin; John R Rohde; Olivia Arizmendi; Wendy L Picking; William D Picking; Jun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-12       Impact factor: 11.205

5.  Molecular architecture of chemoreceptor arrays revealed by cryoelectron tomography of Escherichia coli minicells.

Authors:  Jun Liu; Bo Hu; Dustin R Morado; Sneha Jani; Michael D Manson; William Margolin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-03       Impact factor: 11.205

6.  Structural remodeling of bacteriophage T4 and host membranes during infection initiation.

Authors:  Bo Hu; William Margolin; Ian J Molineux; Jun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

7.  Electron cryotomography reveals ultrastructure alterations in platelets from patients with ovarian cancer.

Authors:  Rui Wang; Rebecca L Stone; Jason T Kaelber; Ryan H Rochat; Alpa M Nick; K Vinod Vijayan; Vahid Afshar-Kharghan; Michael F Schmid; Jing-Fei Dong; Anil K Sood; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

8.  Cryoelectron tomography reveals the sequential assembly of bacterial flagella in Borrelia burgdorferi.

Authors:  Xiaowei Zhao; Kai Zhang; Tristan Boquoi; Bo Hu; M A Motaleb; Kelly A Miller; Milinda E James; Nyles W Charon; Michael D Manson; Steven J Norris; Chunhao Li; Jun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

9.  Subnanometer structures of HIV-1 envelope trimers on aldrithiol-2-inactivated virus particles.

Authors:  Ze Li; Wenwei Li; Maolin Lu; Julian Bess; Cara W Chao; Jason Gorman; Daniel S Terry; Baoshan Zhang; Tongqing Zhou; Scott C Blanchard; Peter D Kwong; Jeffrey D Lifson; Walther Mothes; Jun Liu
Journal:  Nat Struct Mol Biol       Date:  2020-06-29       Impact factor: 15.369

10.  Morphogenesis of the Infectious HIV-1 Virion.

Authors:  Jun-Ichi Sakuragi
Journal:  Front Microbiol       Date:  2011-12-09       Impact factor: 5.640

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