Literature DB >> 20887803

A new pivoting and iterative text detection algorithm for biomedical images.

Songhua Xu1, Michael Krauthammer.   

Abstract

There is interest to expand the reach of literature mining to include the analysis of biomedical images, which often contain a paper's key findings. Examples include recent studies that use Optical Character Recognition (OCR) to extract image text, which is used to boost biomedical image retrieval and classification. Such studies rely on the robust identification of text elements in biomedical images, which is a non-trivial task. In this work, we introduce a new text detection algorithm for biomedical images based on iterative projection histograms. We study the effectiveness of our algorithm by evaluating the performance on a set of manually labeled random biomedical images, and compare the performance against other state-of-the-art text detection algorithms. We demonstrate that our projection histogram-based text detection approach is well suited for text detection in biomedical images, and that the iterative application of the algorithm boosts performance to an F score of .60. We provide a C++ implementation of our algorithm freely available for academic use.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Mesh:

Year:  2010        PMID: 20887803      PMCID: PMC3265968          DOI: 10.1016/j.jbi.2010.09.006

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  8 in total

1.  Integrating image data into biomedical text categorization.

Authors:  Hagit Shatkay; Nawei Chen; Dorothea Blostein
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

2.  Natural language processing and visualization in the molecular imaging domain.

Authors:  P Karina Tulipano; Ying Tao; William S Millar; Pat Zanzonico; Katherine Kolbert; Hua Xu; Hong Yu; Lifeng Chen; Yves A Lussier; Carol Friedman
Journal:  J Biomed Inform       Date:  2006-09-26       Impact factor: 6.317

3.  Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models.

Authors:  Yuntao Qian; Robert F Murphy
Journal:  Bioinformatics       Date:  2007-11-22       Impact factor: 6.937

4.  Automatic text detection and tracking in digital video.

Authors:  H Li; D Doermann; O Kia
Journal:  IEEE Trans Image Process       Date:  2000       Impact factor: 10.856

5.  Morphological text extraction from images.

Authors:  Y Y Hasan; L J Karam
Journal:  IEEE Trans Image Process       Date:  2000       Impact factor: 10.856

6.  Yale Image Finder (YIF): a new search engine for retrieving biomedical images.

Authors:  Songhua Xu; James McCusker; Michael Krauthammer
Journal:  Bioinformatics       Date:  2008-07-09       Impact factor: 6.937

7.  Inferring the demographic history and rate of adaptive substitution in Drosophila.

Authors:  Haipeng Li; Wolfgang Stephan
Journal:  PLoS Genet       Date:  2006-08-17       Impact factor: 5.917

8.  The neurochemical basis of human cortical auditory processing: combining proton magnetic resonance spectroscopy and magnetoencephalography.

Authors:  Peter Sörös; Nikolaus Michael; Melanie Tollkötter; Bettina Pfleiderer
Journal:  BMC Biol       Date:  2006-08-03       Impact factor: 7.431

  8 in total
  4 in total

1.  Finding and accessing diagrams in biomedical publications.

Authors:  Tobias Kuhn; ThaiBinh Luong; Michael Krauthammer
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

2.  Mining images in biomedical publications: Detection and analysis of gel diagrams.

Authors:  Tobias Kuhn; Mate Levente Nagy; Thaibinh Luong; Michael Krauthammer
Journal:  J Biomed Semantics       Date:  2014-02-25

3.  Categorizing biomedicine images using novel image features and sparse coding representation.

Authors:  Jianqiang Sheng; Songhua Xu; Xiaonan Luo
Journal:  BMC Med Genomics       Date:  2013-11-11       Impact factor: 3.063

Review 4.  Mining biomedical images towards valuable information retrieval in biomedical and life sciences.

Authors:  Zeeshan Ahmed; Saman Zeeshan; Thomas Dandekar
Journal:  Database (Oxford)       Date:  2016-08-18       Impact factor: 3.451

  4 in total

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