Literature DB >> 20885990

Utilizing Simple Biochemical Measurements to Predict Lifetime Output of Biocatalysts in Continuous Isothermal Processes.

Thomas A Rogers1, Andreas S Bommarius.   

Abstract

The expected product yield of a biocatalyst during its useful lifetime is an important consideration when designing a continuous biocatalytic process. One important indicator of lifetime biocatalyst productivity is the dimensionless total turnover number (TTN). Here, a method is proposed for estimating the TTN of a given biocatalyst from readily-measured biochemical quantities, namely the specific activity and the deactivation half-life, measured under identical conditions. We demonstrate that this method may be applied to any enzyme whose thermal deactivation follows first-order kinetics, regardless of the number of unfolding intermediates, and that the TTN method circumvents the potential problems associated with measuring specific catalyst output when a portion of the enzyme is already unfolded. The TTN estimation was applied to several representative biocatalysts to demonstrate its applicability in identifying the most cost-effective catalyst from a pool of engineered mutants with similar activity and thermal stability.

Entities:  

Year:  2010        PMID: 20885990      PMCID: PMC2946236          DOI: 10.1016/j.ces.2009.12.005

Source DB:  PubMed          Journal:  Chem Eng Sci        ISSN: 0009-2509            Impact factor:   4.311


  21 in total

Review 1.  Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability.

Authors:  C Vieille; G J Zeikus
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

2.  Improving the activity and stability of GL-7-ACA acylase CA130 by site-directed mutagenesis.

Authors:  Wei Zhang; Yuan Liu; Huabao Zheng; Sheng Yang; Weihong Jiang
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

3.  The dependence of enzyme activity on temperature: determination and validation of parameters.

Authors:  Michelle E Peterson; Roy M Daniel; Michael J Danson; Robert Eisenthal
Journal:  Biochem J       Date:  2007-03-01       Impact factor: 3.857

4.  Catalytic effectiveness, a measure of enzyme proficiency for industrial applications.

Authors:  Richard J Fox; Michael D Clay
Journal:  Trends Biotechnol       Date:  2009-02-03       Impact factor: 19.536

5.  Chemical versus biochemical conversion: when and how to use biocatalysts.

Authors:  J Tramper
Journal:  Biotechnol Bioeng       Date:  1996-10-20       Impact factor: 4.530

6.  Engineering enzymes by 'intelligent' design.

Authors:  Romas Kazlauskas; Stefan Lutz
Journal:  Curr Opin Chem Biol       Date:  2009-03-09       Impact factor: 8.822

Review 7.  Calorimetrically determined dynamics of complex unfolding transitions in proteins.

Authors:  E Freire; W W van Osdol; O L Mayorga; J M Sanchez-Ruiz
Journal:  Annu Rev Biophys Biophys Chem       Date:  1990

8.  Deactivation of TEM-1 β-Lactamase Investigated by Isothermal Batch and Non-Isothermal Continuous Enzyme Membrane Reactor Methods.

Authors:  Thomas A Rogers; Roy M Daniel; Andreas S Bommarius
Journal:  ChemCatChem       Date:  2009-08-24       Impact factor: 5.686

9.  Purification and characterization of an extremely thermostable beta-glucosidase from the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  S W Kengen; E J Luesink; A J Stams; A J Zehnder
Journal:  Eur J Biochem       Date:  1993-04-01

10.  Metabolic pathway promiscuity in the archaeon Sulfolobus solfataricus revealed by studies on glucose dehydrogenase and 2-keto-3-deoxygluconate aldolase.

Authors:  Henry J Lamble; Narinder I Heyer; Steven D Bull; David W Hough; Michael J Danson
Journal:  J Biol Chem       Date:  2003-06-24       Impact factor: 5.157

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  18 in total

1.  Effects of point mutations on the thermostability of B. subtilis lipase: investigating nonadditivity.

Authors:  Bipin Singh; Gopalakrishnan Bulusu; Abhijit Mitra
Journal:  J Comput Aided Mol Des       Date:  2016-09-30       Impact factor: 3.686

2.  Discovery and characterization of a novel ATP/polyphosphate xylulokinase from a hyperthermophilic bacterium Thermotoga maritima.

Authors:  Julia S Martín del Campo; You Chun; Jae-Eung Kim; Rodrigo Patiño; Y-H Percival Zhang
Journal:  J Ind Microbiol Biotechnol       Date:  2013-04-14       Impact factor: 3.346

3.  A reductive aminase from Aspergillus oryzae.

Authors:  Godwin A Aleku; Scott P France; Henry Man; Juan Mangas-Sanchez; Sarah L Montgomery; Mahima Sharma; Friedemann Leipold; Shahed Hussain; Gideon Grogan; Nicholas J Turner
Journal:  Nat Chem       Date:  2017-05-29       Impact factor: 24.427

4.  E. coli Nickel-Iron Hydrogenase 1 Catalyses Non-native Reduction of Flavins: Demonstration for Alkene Hydrogenation by Old Yellow Enzyme Ene-reductases*.

Authors:  Shiny Joseph Srinivasan; Sarah E Cleary; Miguel A Ramirez; Holly A Reeve; Caroline E Paul; Kylie A Vincent
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-11       Impact factor: 15.336

5.  Biochemical and structural characterization of an aromatic ring-hydroxylating dioxygenase for terephthalic acid catabolism.

Authors:  William M Kincannon; Michael Zahn; Rita Clare; Jessica Lusty Beech; Ari Romberg; James Larson; Brian Bothner; Gregg T Beckham; John E McGeehan; Jennifer L DuBois
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-21       Impact factor: 12.779

6.  The Moderately (D)efficient Enzyme: Catalysis-Related Damage In Vivo and Its Repair.

Authors:  Ulschan Bathe; Bryan J Leong; Donald R McCarty; Christopher S Henry; Paul E Abraham; Mark A Wilson; Andrew D Hanson
Journal:  Biochemistry       Date:  2021-11-03       Impact factor: 3.321

7.  Bioinspired Immobilization of Glycerol Dehydrogenase by Metal Ion-Chelated Polyethyleneimines as Artificial Polypeptides.

Authors:  Yonghui Zhang; Hong Ren; Yali Wang; Kainan Chen; Baishan Fang; Shizhen Wang
Journal:  Sci Rep       Date:  2016-04-07       Impact factor: 4.379

8.  Identification and characterization of two new 5-keto-4-deoxy-D-Glucarate Dehydratases/Decarboxylases.

Authors:  André Pick; Barbara Beer; Risa Hemmi; Rena Momma; Jochen Schmid; Kenji Miyamoto; Volker Sieber
Journal:  BMC Biotechnol       Date:  2016-11-17       Impact factor: 2.563

9.  Non-complexed four cascade enzyme mixture: simple purification and synergetic co-stabilization.

Authors:  Suwan Myung; Y-H Percival Zhang
Journal:  PLoS One       Date:  2013-04-09       Impact factor: 3.240

10.  Stabilization of cyclohexanone monooxygenase by a computationally designed disulfide bond spanning only one residue.

Authors:  Hugo L van Beek; Hein J Wijma; Lucie Fromont; Dick B Janssen; Marco W Fraaije
Journal:  FEBS Open Bio       Date:  2014-02-03       Impact factor: 2.693

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