Literature DB >> 20882316

Genome mining for the discovery of new nitrilases in filamentous fungi.

Ondřej Kaplan1, Karel Bezouška, Anna Malandra, Alicja B Veselá, Alena Petříčková, Jürgen Felsberg, Anna Rinágelová, Vladimír Křen, Ludmila Martínková.   

Abstract

PURPOSE OF WORK: our aim is to describe new fungal nitrilases whose sequences were published but whose catalytic properties were unknown. We adapted for expression in E. coli three of the genes and confirmed that the enzymes acted on organic nitriles. The genome mining approach was used to search for nitrilases in filamentous fungi. Synthetic genes encoding nitrilases in Aspergillus niger, Gibberella moniliformis and Neurospora crassa were expressed in Escherichia coli. This is the first heterologous expression of fungal enzymes of this type. The recombinant enzyme derived from G. moniliformis was an aromatic nitrilase with an activity of 390 U l(-1) culture with benzonitrile as substrate. This was much less than the activities of the recombinant enzymes derived from A. niger and N. crassa that had activities of 2500 and 2700 U l(-1) culture, respectively, with phenylacetonitrile as substrate.

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Year:  2010        PMID: 20882316     DOI: 10.1007/s10529-010-0421-7

Source DB:  PubMed          Journal:  Biotechnol Lett        ISSN: 0141-5492            Impact factor:   2.461


  10 in total

Review 1.  Bioengineering of Nitrilases Towards Its Use as Green Catalyst: Applications and Perspectives.

Authors:  Vinod K Nigam; Tesnim Arfi; Vishal Kumar; Pratyoosh Shukla
Journal:  Indian J Microbiol       Date:  2017-03-25       Impact factor: 2.461

2.  Improvement and characterization of a hyperthermophilic glucose isomerase from Thermoanaerobacter ethanolicus and its application in production of high fructose corn syrup.

Authors:  Zhi-Qiang Liu; Wei Zheng; Jian-Feng Huang; Li-Qun Jin; Dong-Xu Jia; Hai-Yan Zhou; Jian-Miao Xu; Cheng-Jun Liao; Xin-Ping Cheng; Bao-Xing Mao; Yu-Guo Zheng
Journal:  J Ind Microbiol Biotechnol       Date:  2015-06-16       Impact factor: 3.346

3.  Classifying nitrilases as aliphatic and aromatic using machine learning technique.

Authors:  Nikhil Sharma; Ruchi Verma; Tek Chand Bhalla
Journal:  3 Biotech       Date:  2018-01-12       Impact factor: 2.406

4.  Exploring the potential of fungal arylacetonitrilases in mandelic acid synthesis.

Authors:  Alicja B Veselá; Alena Křenková; Ludmila Martínková
Journal:  Mol Biotechnol       Date:  2015-05       Impact factor: 2.695

5.  A comparative study of nitrilases identified by genome mining.

Authors:  Ondřej Kaplan; Alicja B Veselá; Alena Petříčková; Fabrizia Pasquarelli; Martina Pičmanová; Anna Rinágelová; Tek Chand Bhalla; Miroslav Pátek; Ludmila Martínková
Journal:  Mol Biotechnol       Date:  2013-07       Impact factor: 2.695

6.  Cryo-EM and directed evolution reveal how Arabidopsis nitrilase specificity is influenced by its quaternary structure.

Authors:  Andani E Mulelu; Angela M Kirykowicz; Jeremy D Woodward
Journal:  Commun Biol       Date:  2019-07-17

7.  Substrate specificity of plant nitrilase complexes is affected by their helical twist.

Authors:  Jeremy D Woodward; Inga Trompetter; B Trevor Sewell; Markus Piotrowski
Journal:  Commun Biol       Date:  2018-11-02

Review 8.  Nitrilases in nitrile biocatalysis: recent progress and forthcoming research.

Authors:  Jin-Song Gong; Zhen-Ming Lu; Heng Li; Jin-Song Shi; Zhe-Min Zhou; Zheng-Hong Xu
Journal:  Microb Cell Fact       Date:  2012-10-30       Impact factor: 5.328

9.  Fungal His-tagged nitrilase from Gibberella intermedia: gene cloning, heterologous expression and biochemical properties.

Authors:  Jin-Song Gong; Heng Li; Xiao-Yan Zhu; Zhen-Ming Lu; Yan Wu; Jing-Song Shi; Zheng-Hong Xu
Journal:  PLoS One       Date:  2012-11-30       Impact factor: 3.240

10.  The use of clade-specific PCR assays to identify novel nitrilase genes from environmental isolates.

Authors:  Tríona-Marie Dooley-Cullinane; Catherine O'Reilly; Bilal Aslam; David P Weiner; David O'Neill; Erica Owens; Denise O'Meara; Lee Coffey
Journal:  Microbiologyopen       Date:  2018-12-30       Impact factor: 3.139

  10 in total

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