Literature DB >> 20879310

A generative model for brain tumor segmentation in multi-modal images.

Bjoern H Menze1, Koen Van Leemput, Danial Lashkari, Marc-André Weber, Nicholas Ayache, Polina Golland.   

Abstract

We introduce a generative probabilistic model for segmentation of tumors in multi-dimensional images. The model allows for different tumor boundaries in each channel, reflecting difference in tumor appearance across modalities. We augment a probabilistic atlas of healthy tissue priors with a latent atlas of the lesion and derive the estimation algorithm to extract tumor boundaries and the latent atlas from the image data. We present experiments on 25 glioma patient data sets, demonstrating significant improvement over the traditional multivariate tumor segmentation.

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Year:  2010        PMID: 20879310      PMCID: PMC3050038          DOI: 10.1007/978-3-642-15745-5_19

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  9 in total

1.  Automated model-based tissue classification of MR images of the brain.

Authors:  K Van Leemput; F Maes; D Vandermeulen; P Suetens
Journal:  IEEE Trans Med Imaging       Date:  1999-10       Impact factor: 10.048

2.  A unifying approach to registration, segmentation, and intensity correction.

Authors:  Kilian M Pohl; John Fisher; James J Levitt; Martha E Shenton; Ron Kikinis; W Eric L Grimson; William M Wells
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

3.  ORBIT: a multiresolution framework for deformable registration of brain tumor images.

Authors:  Evangelia I Zacharaki; Dinggang Shen; Seung-Koo Lee; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2008-08       Impact factor: 10.048

4.  Automated segmentation of multiple sclerosis lesions by model outlier detection.

Authors:  K Van Leemput; F Maes; D Vandermeulen; A Colchester; P Suetens
Journal:  IEEE Trans Med Imaging       Date:  2001-08       Impact factor: 10.048

5.  Atlas-based segmentation of pathological MR brain images using a model of lesion growth.

Authors:  Meritxell Bach Cuadra; Claudio Pollo; Anton Bardera; Olivier Cuisenaire; Jean-Guy Villemure; Jean-Philippe Thiran
Journal:  IEEE Trans Med Imaging       Date:  2004-10       Impact factor: 10.048

6.  A brain tumor segmentation framework based on outlier detection.

Authors:  Marcel Prastawa; Elizabeth Bullitt; Sean Ho; Guido Gerig
Journal:  Med Image Anal       Date:  2004-09       Impact factor: 8.545

7.  Segmenting brain tumors using pseudo-conditional random fields.

Authors:  Chi-Hoon Lee; Shaojun Wang; Albert Murtha; Matthew R G Brown; Russell Greiner
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

8.  A discriminative model-constrained graph cuts approach to fully automated pediatric brain tumor segmentation in 3-D MRI.

Authors:  Michael Wels; Gustavo Carneiro; Alexander Aplas; Martin Huber; Joachim Hornegger; Dorin Comaniciu
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

9.  Automatic brain tumor segmentation by subject specific modification of atlas priors.

Authors:  Marcel Prastawa; Elizabeth Bullitt; Nathan Moon; Koen Van Leemput; Guido Gerig
Journal:  Acad Radiol       Date:  2003-12       Impact factor: 3.173

  9 in total
  37 in total

1.  A Generative Probabilistic Model and Discriminative Extensions for Brain Lesion Segmentation--With Application to Tumor and Stroke.

Authors:  Bjoern H Menze; Koen Van Leemput; Danial Lashkari; Tammy Riklin-Raviv; Ezequiel Geremia; Esther Alberts; Philipp Gruber; Susanne Wegener; Marc-Andre Weber; Gabor Szekely; Nicholas Ayache; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2015-11-20       Impact factor: 10.048

2.  Deformable templates guided discriminative models for robust 3D brain MRI segmentation.

Authors:  Cheng-Yi Liu; Juan Eugenio Iglesias; Zhuowen Tu
Journal:  Neuroinformatics       Date:  2013-10

3.  Iterative probabilistic voxel labeling: automated segmentation for analysis of The Cancer Imaging Archive glioblastoma images.

Authors:  T C Steed; J M Treiber; K S Patel; Z Taich; N S White; M L Treiber; N Farid; B S Carter; A M Dale; C C Chen
Journal:  AJNR Am J Neuroradiol       Date:  2014-11-20       Impact factor: 3.825

4.  Analyzing magnetic resonance imaging data from glioma patients using deep learning.

Authors:  Bjoern Menze; Fabian Isensee; Roland Wiest; Bene Wiestler; Klaus Maier-Hein; Mauricio Reyes; Spyridon Bakas
Journal:  Comput Med Imaging Graph       Date:  2020-12-02       Impact factor: 4.790

5.  Modeling 4D Pathological Changes by Leveraging Normative Models.

Authors:  Bo Wang; Marcel Prastawa; Andrei Irimia; Avishek Saha; Wei Liu; S Y Matthew Goh; Paul M Vespa; John D Van Horn; Guido Gerig
Journal:  Comput Vis Image Underst       Date:  2016-10       Impact factor: 3.876

6.  Multifractal texture estimation for detection and segmentation of brain tumors.

Authors:  Atiq Islam; Syed M S Reza; Khan M Iftekharuddin
Journal:  IEEE Trans Biomed Eng       Date:  2013-06-27       Impact factor: 4.538

Review 7.  Graph analysis of functional brain networks: practical issues in translational neuroscience.

Authors:  Fabrizio De Vico Fallani; Jonas Richiardi; Mario Chavez; Sophie Achard
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-10-05       Impact factor: 6.237

8.  Deep Learning and Texture-Based Semantic Label Fusion for Brain Tumor Segmentation.

Authors:  L Vidyaratne; M Alam; Z Shboul; K M Iftekharuddin
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-02-27

9.  A Patient-Specific Segmentation Framework for Longitudinal MR Images of Traumatic Brain Injury.

Authors:  Bo Wang; Marcel Prastawa; Andrei Irimia; Micah C Chambers; Paul M Vespa; John D Van Horn; Guido Gerig
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-03-23

10.  GLISTR: glioma image segmentation and registration.

Authors:  Ali Gooya; Kilian M Pohl; Michel Bilello; Luigi Cirillo; George Biros; Elias R Melhem; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2012-08-13       Impact factor: 10.048

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