Literature DB >> 20879281

Fast and accurate reconstruction of HARDI data using compressed sensing.

Oleg Michailovich1, Yogesh Rathi.   

Abstract

A spectrum of brain-related disorders are nowadays known to manifest themselves in degradation of the integrity and connectivity of neural tracts in the white matter of the brain. Such damage tends to affect the pattern of water diffusion in the white matter--the information which can be quantified by diffusion MRI (dMRI). Unfortunately, practical implementation of dMRI still poses a number of challenges which hamper its wide-spread integration into regular clinical practice. Chief among these is the problem of long scanning times. In particular, in the case of High Angular Resolution Diffusion Imaging (HARDI), the scanning times are known to increase linearly with the number of diffusion-encoding gradients. In this research, we use the theory of compressive sampling (aka compressed sensing) to substantially reduce the number of diffusion gradients without compromising the informational content of HARDI signals. The experimental part of our study compares the proposed method with a number of alternative approaches, and shows that the former results in more accurate estimation of HARDI data in terms of the mean squared error.

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Year:  2010        PMID: 20879281      PMCID: PMC3082842          DOI: 10.1007/978-3-642-15705-9_74

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  17 in total

Review 1.  Diffusion tensor imaging: concepts and applications.

Authors:  D Le Bihan; J F Mangin; C Poupon; C A Clark; S Pappata; N Molko; H Chabriat
Journal:  J Magn Reson Imaging       Date:  2001-04       Impact factor: 4.813

2.  Characterization of anisotropy in high angular resolution diffusion-weighted MRI.

Authors:  Lawrence R Frank
Journal:  Magn Reson Med       Date:  2002-06       Impact factor: 4.668

3.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

4.  Characterization and propagation of uncertainty in diffusion-weighted MR imaging.

Authors:  T E J Behrens; M W Woolrich; M Jenkinson; H Johansen-Berg; R G Nunes; S Clare; P M Matthews; J M Brady; S M Smith
Journal:  Magn Reson Med       Date:  2003-11       Impact factor: 4.668

5.  Measurement of fiber orientation distributions using high angular resolution diffusion imaging.

Authors:  Adam W Anderson
Journal:  Magn Reson Med       Date:  2005-11       Impact factor: 4.668

Review 6.  Multiple-fiber reconstruction algorithms for diffusion MRI.

Authors:  Daniel C Alexander
Journal:  Ann N Y Acad Sci       Date:  2005-12       Impact factor: 5.691

7.  Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis.

Authors:  Christopher P Hess; Pratik Mukherjee; Eric T Han; Duan Xu; Daniel B Vigneron
Journal:  Magn Reson Med       Date:  2006-07       Impact factor: 4.668

8.  Estimation of the effective self-diffusion tensor from the NMR spin echo.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  J Magn Reson B       Date:  1994-03

9.  On approximation of orientation distributions by means of spherical ridgelets.

Authors:  Oleg Michailovich; Yogesh Rathi
Journal:  IEEE Trans Image Process       Date:  2009-11-03       Impact factor: 10.856

10.  Detection and modeling of non-Gaussian apparent diffusion coefficient profiles in human brain data.

Authors:  D C Alexander; G J Barker; S R Arridge
Journal:  Magn Reson Med       Date:  2002-08       Impact factor: 4.668

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  8 in total

1.  Probabilistic ODF estimation from reduced HARDI data with sparse regularization.

Authors:  Antonio Tristán-Vega; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

2.  Multi-shell diffusion signal recovery from sparse measurements.

Authors:  Y Rathi; O Michailovich; F Laun; K Setsompop; P E Grant; C-F Westin
Journal:  Med Image Anal       Date:  2014-07-05       Impact factor: 8.545

3.  Spatially regularized compressed sensing for high angular resolution diffusion imaging.

Authors:  Oleg Michailovich; Yogesh Rathi; Sudipto Dolui
Journal:  IEEE Trans Med Imaging       Date:  2011-05       Impact factor: 10.048

4.  Sparse multi-shell diffusion imaging.

Authors:  Yogesh Rathi; O Michailovich; K Setsompop; S Bouix; M E Shenton; C F Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

5.  Fiber tractography based on diffusion tensor imaging compared with high-angular-resolution diffusion imaging with compressed sensing: initial experience.

Authors:  Daniela Kuhnt; Miriam H A Bauer; Jan Egger; Mirco Richter; Tina Kapur; Jens Sommer; Dorit Merhof; Christopher Nimsky
Journal:  Neurosurgery       Date:  2013-01       Impact factor: 4.654

6.  Validation of tractography: Comparison with manganese tracing.

Authors:  Thomas R Knösche; Alfred Anwander; Matthew Liptrot; Tim B Dyrby
Journal:  Hum Brain Mapp       Date:  2015-07-14       Impact factor: 5.038

7.  Reconstruction of white matter tracts via repeated deterministic streamline tracking--initial experience.

Authors:  Miriam H A Bauer; Daniela Kuhnt; Sebastiano Barbieri; Jan Klein; Andreas Becker; Bernd Freisleben; Horst K Hahn; Christopher Nimsky
Journal:  PLoS One       Date:  2013-05-06       Impact factor: 3.240

8.  Optic radiation fiber tractography in glioma patients based on high angular resolution diffusion imaging with compressed sensing compared with diffusion tensor imaging - initial experience.

Authors:  Daniela Kuhnt; Miriam H A Bauer; Jens Sommer; Dorit Merhof; Christopher Nimsky
Journal:  PLoS One       Date:  2013-07-26       Impact factor: 3.240

  8 in total

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