Literature DB >> 20875865

The complete mitochondrial genome of Radix balthica (Pulmonata, Basommatophora), obtained by low coverage shot gun next generation sequencing.

B Feldmeyer1, K Hoffmeier, M Pfenninger.   

Abstract

A 454-FLX low-coverage sequencing approach was used to assemble the mitochondrial genome of Radix balthica. The mtDNA sequence is 13,993 nt long and contains 37 genes (13 protein coding genes, two rRNAs and 22 tRNAs). Four genes, the 12S RNA and seven tRNAs are transcribed in reverse order. The sequence is AT rich (71.3%), similar to other basommatophoran species. Comparison with the most closely related mt genomes available (Biomphalaria glabrata and Biomphalaria tenagophila) revealed identical gene orders except for five tRNAs. Next generation sequencing proved to be a fast and easy method for sequencing an entire mitochondrial genome.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20875865     DOI: 10.1016/j.ympev.2010.09.012

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  21 in total

1.  Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance.

Authors:  Barbara Feldmeyer; Christopher W Wheat; Nicolas Krezdorn; Björn Rotter; Markus Pfenninger
Journal:  BMC Genomics       Date:  2011-06-16       Impact factor: 3.969

2.  The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing.

Authors:  Dick S J Groenenberg; Walter Pirovano; Edmund Gittenberger; Menno Schilthuizen
Journal:  BMC Genomics       Date:  2012-03-26       Impact factor: 3.969

3.  Ten new complete mitochondrial genomes of pulmonates (Mollusca: Gastropoda) and their impact on phylogenetic relationships.

Authors:  Tracy R White; Michele M Conrad; Roger Tseng; Shaina Balayan; Rosemary Golding; António Manuel de Frias Martins; Benoît A Dayrat
Journal:  BMC Evol Biol       Date:  2011-10-10       Impact factor: 3.260

Review 4.  Molluscan mitochondrial genomes break the rules.

Authors:  Fabrizio Ghiselli; André Gomes-Dos-Santos; Coen M Adema; Manuel Lopes-Lima; Joel Sharbrough; Jeffrey L Boore
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-05       Impact factor: 6.671

5.  Exceptionally high cumulative percentage of NUMTs originating from linear mitochondrial DNA molecules in the Hydra magnipapillata genome.

Authors:  Shen Song; Feng Jiang; Jianbo Yuan; Wei Guo; Yongwang Miao
Journal:  BMC Genomics       Date:  2013-07-04       Impact factor: 3.969

6.  Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria.

Authors:  Robert Ekblom; Linnéa Smeds; Hans Ellegren
Journal:  BMC Genomics       Date:  2014-06-12       Impact factor: 3.969

7.  Physella acuta: atypical mitochondrial gene order among panpulmonates (Gastropoda).

Authors:  Journey R Nolan; Ulfar Bergthorsson; Coen M Adema
Journal:  J Molluscan Stud       Date:  2014-05-14       Impact factor: 1.348

8.  The complete mitochondrial genome of Galba pervia (Gastropoda: Mollusca), an intermediate host snail of Fasciola spp.

Authors:  Guo-Hua Liu; Shu-Yan Wang; Wei-Yi Huang; Guang-Hui Zhao; Shu-Jun Wei; Hui-Qun Song; Min-Jun Xu; Rui-Qing Lin; Dong-Hui Zhou; Xing-Quan Zhu
Journal:  PLoS One       Date:  2012-07-26       Impact factor: 3.240

9.  Exploring Pandora's box: potential and pitfalls of low coverage genome surveys for evolutionary biology.

Authors:  Florian Leese; Philipp Brand; Andrey Rozenberg; Christoph Mayer; Shobhit Agrawal; Johannes Dambach; Lars Dietz; Jana S Doemel; William P Goodall-Copstake; Christoph Held; Jennifer A Jackson; Kathrin P Lampert; Katrin Linse; Jan N Macher; Jennifer Nolzen; Michael J Raupach; Nicole T Rivera; Christoph D Schubart; Sebastian Striewski; Ralph Tollrian; Chester J Sands
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

10.  Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix.

Authors:  Barbara Feldmeyer; Bastian Greshake; Elisabeth Funke; Ingo Ebersberger; Markus Pfenninger
Journal:  BMC Evol Biol       Date:  2015-08-19       Impact factor: 3.260

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