Literature DB >> 20868078

Limited resources in a driven diffusion process.

Chris A Brackley1, M Carmen Romano, Celso Grebogi, Marco Thiel.   

Abstract

The advance of particles in many driven diffusion systems depends on the availability of resources in the surrounding environment. In the balance between supply and demand of such resources we are confronted with a regime in which, under limited resource availability, the flow is markedly reduced. In the context of mRNA translation this represents the finite availability of amino acid-tRNA molecules. In this limited resources regime a severe depletion of amino acid tRNAs is also observed. These dramatic effects are vital to our understanding of translation, and are likely to also be important for the many other applications of driven diffusion models.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20868078      PMCID: PMC3638715          DOI: 10.1103/PhysRevLett.105.078102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  13 in total

1.  Totally asymmetric exclusion process with extended objects: a model for protein synthesis.

Authors:  Leah B Shaw; R K P Zia; Kelvin H Lee
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-08-18

2.  Queuing transitions in the asymmetric simple exclusion process.

Authors:  Meesoon Ha; Jussi Timonen; Marcel den Nijs
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-11-24

3.  Boundary-induced phase transitions in driven diffusive systems.

Authors: 
Journal:  Phys Rev Lett       Date:  1991-09-30       Impact factor: 9.161

4.  Clustered bottlenecks in mRNA translation and protein synthesis.

Authors:  Tom Chou; Greg Lakatos
Journal:  Phys Rev Lett       Date:  2004-11-01       Impact factor: 9.161

5.  Inhomogeneous exclusion processes with extended objects: the effect of defect locations.

Authors:  J J Dong; B Schmittmann; R K P Zia
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-11-13

6.  Competition between multiple totally asymmetric simple exclusion processes for a finite pool of resources.

Authors:  L Jonathan Cook; R K P Zia; B Schmittmann
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-28

7.  Codon usage determines translation rate in Escherichia coli.

Authors:  M A Sørensen; C G Kurland; S Pedersen
Journal:  J Mol Biol       Date:  1989-05-20       Impact factor: 5.469

8.  Kinetics of biopolymerization on nucleic acid templates.

Authors:  C T MacDonald; J H Gibbs; A C Pipkin
Journal:  Biopolymers       Date:  1968       Impact factor: 2.505

9.  Identity of tRNA for yeast tyrosyl-tRNA synthetase: tyrosylation is more sensitive to identity nucleotides than to structural features.

Authors:  P Fechter; J Rudinger-Thirion; A Théobald-Dietrich; R Giegé
Journal:  Biochemistry       Date:  2000-02-22       Impact factor: 3.162

10.  Disordered asymmetric simple exclusion process: mean-field treatment.

Authors:  R J Harris; R B Stinchcombe
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-07-02
View more
  3 in total

1.  The dynamics of supply and demand in mRNA translation.

Authors:  Chris A Brackley; M Carmen Romano; Marco Thiel
Journal:  PLoS Comput Biol       Date:  2011-10-13       Impact factor: 4.475

Review 2.  Mathematical and Computational Modelling of Ribosomal Movement and Protein Synthesis: an overview.

Authors:  Tobias von der Haar
Journal:  Comput Struct Biotechnol J       Date:  2012-02-20       Impact factor: 7.271

3.  A Mechanistic Model for Cooperative Behavior of Co-transcribing RNA Polymerases.

Authors:  Tamra Heberling; Lisa Davis; Jakub Gedeon; Charles Morgan; Tomáš Gedeon
Journal:  PLoS Comput Biol       Date:  2016-08-12       Impact factor: 4.475

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.