Literature DB >> 20867679

DNA compaction in a crowded environment with negatively charged proteins.

M K Krotova1, V V Vasilevskaya, N Makita, K Yoshikawa, A R Khokhlov.   

Abstract

We studied the conformational properties of DNA in a salt solution of the strongly charged protein bovine serum albumin. DNA is compacted when a suitable amount of bovine serum albumin is added to the solution due to a crowding effect and strong electrostatic repulsion between DNA and bovine serum albumin, both of which carry negative charges. However, DNA undergoes an unfolding transition with an increase in the salt concentration. This observation contradicts the current understanding of polymer- and salt-induced condensation, ψ condensation. We propose a simple theoretical model by taking into account the competition between the translational entropy of ions and electrostatic interaction.

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Year:  2010        PMID: 20867679     DOI: 10.1103/PhysRevLett.105.128302

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

1.  Bacterial Nucleoid: Interplay of DNA Demixing and Supercoiling.

Authors:  Marc Joyeux
Journal:  Biophys J       Date:  2019-09-26       Impact factor: 4.033

2.  Local rigidification and possible coacervation of the Escherichia coli DNA by cationic nylon-3 polymers.

Authors:  Yanyu Zhu; Lei Liu; Mainak Mustafi; Leslie A Rank; Samuel H Gellman; James C Weisshaar
Journal:  Biophys J       Date:  2021-10-30       Impact factor: 4.033

3.  Compaction of Single-Molecule Megabase-Long Chromatin under the Influence of Macromolecular Crowding.

Authors:  Anatoly Zinchenko; Nikolay V Berezhnoy; Qinming Chen; Lars Nordenskiöld
Journal:  Biophys J       Date:  2018-05-03       Impact factor: 4.033

4.  The effects of polydisperse crowders on the compaction of the Escherichia coli nucleoid.

Authors:  Da Yang; Jaana Männik; Scott T Retterer; Jaan Männik
Journal:  Mol Microbiol       Date:  2020-02-05       Impact factor: 3.501

5.  Self-organized patterning through the dynamic segregation of DNA and silica nanoparticles.

Authors:  Rastko Joksimovic; Shun Watanabe; Sven Riemer; Michael Gradzielski; Kenichi Yoshikawa
Journal:  Sci Rep       Date:  2014-01-13       Impact factor: 4.379

6.  Counterion effects on nano-confined metal-drug-DNA complexes.

Authors:  Nupur Biswas; Sreeja Chakraborty; Alokmay Datta; Munna Sarkar; Mrinmay K Mukhopadhyay; Mrinal K Bera; Hideki Seto
Journal:  Beilstein J Nanotechnol       Date:  2016-01-19       Impact factor: 3.649

7.  Rigidification of the Escherichia coli cytoplasm by the human antimicrobial peptide LL-37 revealed by superresolution fluorescence microscopy.

Authors:  Yanyu Zhu; Sonisilpa Mohapatra; James C Weisshaar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-31       Impact factor: 11.205

  7 in total

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