Literature DB >> 20866841

Minimal genetic device with multiple tunable functions.

Sangram Bagh1, Mahuya Mandal, David R McMillen.   

Abstract

The ability to design artificial genetic devices with predictable functions is critical to the development of synthetic biology. Given the highly variable requirements of biological designs, the ability to tune the behavior of a genetic device is also of key importance; such tuning will allow devices to be matched with other components into larger systems, and to be shifted into the correct parameter regimes to elicit desired behaviors. Here, we have developed a minimal synthetic genetic system that acts as a multifunction, tunable biodevice in the bacterium Escherichia coli. First, it acts as a biochemical AND gate, sensing the extracellular small molecules isopropyl β-D -1-thiogalactopyranoside and anhydrotetracycline as two input signals and expressing enhanced green fluorescent protein as an output signal. Next, the output signal of the AND gate can be amplified by the application of another extracellular chemical, arabinose. Further, the system can generate a wide range of chemically tunable single input-output response curves, without any genetic alteration of the circuit, by varying the concentrations of a set of extracellular small molecules. We have developed and parameterized a simple transfer function model for the system, and shown that the model successfully explains and predicts the quantitative relationships between input and output signals in the system.

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Mesh:

Year:  2010        PMID: 20866841     DOI: 10.1103/PhysRevE.82.021911

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  5 in total

Review 1.  Recent advances and opportunities in synthetic logic gates engineering in living cells.

Authors:  Vijai Singh
Journal:  Syst Synth Biol       Date:  2014-08-28

2.  Physical constraints on biological integral control design for homeostasis and sensory adaptation.

Authors:  Jordan Ang; David R McMillen
Journal:  Biophys J       Date:  2013-01-22       Impact factor: 4.033

3.  Tuning response curves for synthetic biology.

Authors:  Jordan Ang; Edouard Harris; Brendan J Hussey; Richard Kil; David R McMillen
Journal:  ACS Synth Biol       Date:  2013-09-03       Impact factor: 5.110

4.  A frame-shifted gene, which rescued its function by non-natural start codons and its application in constructing synthetic gene circuits.

Authors:  Kathakali Sarkar; Sayak Mukhopadhyay; Deepro Bonnerjee; Rajkamal Srivastava; Sangram Bagh
Journal:  J Biol Eng       Date:  2019-03-01       Impact factor: 4.355

5.  Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast.

Authors:  Mostafizur Mazumder; David R McMillen
Journal:  Nucleic Acids Res       Date:  2014-07-23       Impact factor: 16.971

  5 in total

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