Literature DB >> 20866840

Gauge field theory of chirally folded homopolymers with applications to folded proteins.

Ulf H Danielsson1, Martin Lundgren, Antti J Niemi.   

Abstract

We combine the principle of gauge invariance with extrinsic string geometry to develop a lattice model that can be employed to theoretically describe properties of chiral, unbranched homopolymers. We find that in its low temperature phase the model is in the same universality class with proteins that are deposited in the Protein Data Bank, in the sense of the compactness index. We apply the model to analyze various statistical aspects of folded proteins. Curiously we find that it can produce results that are a very good good match to the data in the Protein Data Bank.

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Year:  2010        PMID: 20866840     DOI: 10.1103/PhysRevE.82.021910

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  6 in total

1.  Coexistence of phases in a protein heterodimer.

Authors:  Andrey Krokhotin; Adam Liwo; Antti J Niemi; Harold A Scheraga
Journal:  J Chem Phys       Date:  2012-07-21       Impact factor: 3.488

2.  Clustering and percolation in protein loop structures.

Authors:  Xubiao Peng; Jianfeng He; Antti J Niemi
Journal:  BMC Struct Biol       Date:  2015-10-29

3.  Study of correlations between protein peptide plane dynamics and side chain dynamics.

Authors:  Yanzhen Hou; Jiaojiao Liu; Jianfeng He; Xubiao Peng; Antti J Niemi
Journal:  PLoS One       Date:  2019-04-12       Impact factor: 3.240

4.  Protein tertiary structure and the myoglobin phase diagram.

Authors:  Alexander Begun; Alexander Molochkov; Antti J Niemi
Journal:  Sci Rep       Date:  2019-07-25       Impact factor: 4.379

5.  Topological Indices of Proteins.

Authors:  Dmitry Melnikov; Antti J Niemi; Ara Sedrakyan
Journal:  Sci Rep       Date:  2019-10-10       Impact factor: 4.379

6.  On topology and knotty entanglement in protein folding.

Authors:  Alexander Begun; Sergei Liubimov; Alexander Molochkov; Antti J Niemi
Journal:  PLoS One       Date:  2021-01-13       Impact factor: 3.240

  6 in total

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