Literature DB >> 20866447

Compression of random coils due to macromolecular crowding: scaling effects.

C Le Coeur1, J Teixeira, P Busch, S Longeville.   

Abstract

The addition of a macromolecular crowding agent to a dilute solution of polymer exerts a compressive force that tends to reduce the size of the chain. We study here the effect of changing the size ratio between the random coil and the crowding agent. The compression occurs at lower crowding agent concentration, Φ when polymer molecular weight increases. The Flory exponent ν(Φ) decreases from ν(0)≃0.48 in water down to 0.3 with macromolecular crowding. The effective polymer-polymer interactions change from repulsive to strongly attractive inducing aggregation of the chains. This effect changes drastically for larger polymer sizes, being much more pronounced at high molecular weights.

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Year:  2010        PMID: 20866447     DOI: 10.1103/PhysRevE.81.061914

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  12 in total

1.  Macromolecular crowding effects on two homologs of ribosomal protein s16: protein-dependent structural changes and local interactions.

Authors:  Therese Mikaelsson; Jörgen Ådén; Pernilla Wittung-Stafshede; Lennart B-Å Johansson
Journal:  Biophys J       Date:  2014-07-15       Impact factor: 4.033

2.  A sensor for quantification of macromolecular crowding in living cells.

Authors:  Arnold J Boersma; Inge S Zuhorn; Bert Poolman
Journal:  Nat Methods       Date:  2015-02-02       Impact factor: 28.547

Review 3.  Effects of macromolecular crowding agents on protein folding in vitro and in silico.

Authors:  Alexander Christiansen; Qian Wang; Margaret S Cheung; Pernilla Wittung-Stafshede
Journal:  Biophys Rev       Date:  2013-02-19

4.  Direct observation of protein unfolded state compaction in the presence of macromolecular crowding.

Authors:  Therese Mikaelsson; Jörgen Adén; Lennart B-Å Johansson; Pernilla Wittung-Stafshede
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

5.  Intrinsically Disordered Protein Exhibits Both Compaction and Expansion under Macromolecular Crowding.

Authors:  Anthony Banks; Sanbo Qin; Kevin L Weiss; Christopher B Stanley; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2018-03-13       Impact factor: 4.033

Review 6.  Toward an understanding of biochemical equilibria within living cells.

Authors:  Germán Rivas; Allen P Minton
Journal:  Biophys Rev       Date:  2017-12-12

7.  Effects of Macromolecular Crowding on the Conformational Ensembles of Disordered Proteins.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  J Phys Chem Lett       Date:  2013-10-17       Impact factor: 6.475

8.  Quantitative characterization of the concentration-dependent interaction between molecules of Dextran 70 in aqueous solution: Measurement and analysis in the context of thermodynamic and compressible sphere models.

Authors:  Cristina Fernández; Adedayo A Fodeke; Allen P Minton
Journal:  Biopolymers       Date:  2019-05-06       Impact factor: 2.505

9.  Minimal effects of macromolecular crowding on an intrinsically disordered protein: a small-angle neutron scattering study.

Authors:  David P Goldenberg; Brian Argyle
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

Review 10.  Influence of crowded cellular environments on protein folding, binding, and oligomerization: biological consequences and potentials of atomistic modeling.

Authors:  Huan-Xiang Zhou
Journal:  FEBS Lett       Date:  2013-02-05       Impact factor: 4.124

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