Literature DB >> 20866443

Mechanical energy transfer and dissipation in fibrous beta-sheet-rich proteins.

Zhiping Xu1, Markus J Buehler.   

Abstract

Mechanical properties of structural protein materials are crucial for our understanding of biological processes and disease states. Through utilization of molecular simulation based on stress wave tracking, we investigate mechanical energy transfer processes in fibrous beta-sheet-rich proteins that consist of highly ordered hydrogen bond (H-bond) networks. By investigating four model proteins including two morphologies of amyloids, beta solenoids, and silk beta-sheet nanocrystals, we find that all beta-sheet-rich protein fibrils provide outstanding elastic moduli, where the silk nanocrystal reaches the highest value of ≈40 GPa. However, their capacities to dissipate mechanical energy differ significantly and are controlled strongly by the underlying molecular structure of H-bond network. Notably, silk beta-sheet nanocrystals feature a ten times higher energy damping coefficient than others, owing to flexible intrastrand motions in the transverse directions. The results demonstrate a unique feature of silk nanocrystals, their capacity to simultaneously provide extreme stiffness and energy dissipation capacity. Our results could help one to explain the remarkable properties of silks from an atomistic and molecular perspective, in particular its great toughness and energy dissipation capacity, and may enable the design of multifunctional nanomaterials with outstanding stiffness, strength, and impact resistance.

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Year:  2010        PMID: 20866443     DOI: 10.1103/PhysRevE.81.061910

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

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Authors:  Tuomas P J Knowles; Markus J Buehler
Journal:  Nat Nanotechnol       Date:  2011-07-31       Impact factor: 39.213

2.  Characterization of the viscoelastic behavior of a simplified collagen micro-fibril based on molecular dynamics simulations.

Authors:  Hossein Ghodsi; Kurosh Darvish
Journal:  J Mech Behav Biomed Mater       Date:  2016-06-11

3.  Force distribution reveals signal transduction in E. coli Hsp90.

Authors:  Christian Seifert; Frauke Gräter
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

4.  How fast does a signal propagate through proteins?

Authors:  Hui T Young; Scott A Edwards; Frauke Gräter
Journal:  PLoS One       Date:  2013-06-06       Impact factor: 3.240

5.  Mechanics of metal-catecholate complexes: the roles of coordination state and metal types.

Authors:  Zhiping Xu
Journal:  Sci Rep       Date:  2013-10-10       Impact factor: 4.379

6.  An allosteric signaling pathway of human 3-phosphoglycerate kinase from force distribution analysis.

Authors:  Zoltan Palmai; Christian Seifert; Frauke Gräter; Erika Balog
Journal:  PLoS Comput Biol       Date:  2014-01-23       Impact factor: 4.475

7.  A tool for visualizing protein motions in time-resolved crystallography.

Authors:  Cecilia Wickstrand; Gergely Katona; Takanori Nakane; Przemyslaw Nogly; Joerg Standfuss; Eriko Nango; Richard Neutze
Journal:  Struct Dyn       Date:  2020-04-01       Impact factor: 2.920

  7 in total

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