Literature DB >> 20866146

Glycine in aqueous solution: solvation shells, interfacial water, and vibrational spectroscopy from ab initio molecular dynamics.

Jian Sun1, David Bousquet, Harald Forbert, Dominik Marx.   

Abstract

An aqueous glycine solution is studied with ab initio molecular dynamics to investigate the structural aspects of the different solvation shells within the zwitterion and their impact on the infrared spectrum. The individual contributions to the total IR spectrum from glycine and solvation water are decomposed systematically using the standard schemes in terms of maximally localized Wannier orbitals to define approximate molecular dipole moments in solution. The IR spectra of the aqueous solution and of the solvated zwitterionic glycine molecule itself are compared to those stemming from neutral glycine in the gas phase and a virtual "isolated" zwitterionic glycine molecule vertically transferred from solution into vacuum. Furthermore, electronic polarization effects due to solute-solvent coupling are discussed in detail for the solute and for the interfacial solvent molecules based on dipole moment distribution functions.

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Year:  2010        PMID: 20866146     DOI: 10.1063/1.3481576

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  A computational model of the glycine tautomerization reaction in aqueous solution.

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Journal:  J Mol Model       Date:  2014-02-22       Impact factor: 1.810

2.  A consistent force field parameter set for zwitterionic amino acid residues.

Authors:  Anselm H C Horn
Journal:  J Mol Model       Date:  2014-10-24       Impact factor: 1.810

3.  A comparative study of the vibrational and thermodynamic properties of α-RDX and γ-RDX under ambient conditions.

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Journal:  J Mol Model       Date:  2019-06-07       Impact factor: 1.810

4.  Molecular Dynamics Simulation of Association Processes in Aqueous Solutions of Maleate Salts of Drug-like Compounds: The Role of Counterion.

Authors:  Mikhail V Vener; Denis E Makhrov; Alexander P Voronin; Daria R Shalafan
Journal:  Int J Mol Sci       Date:  2022-06-04       Impact factor: 6.208

5.  Diclofenac Ion Hydration: Experimental and Theoretical Search for Anion Pairs.

Authors:  Anastasia V Shishkina; Alexander A Ksenofontov; Nikita V Penkov; Mikhail V Vener
Journal:  Molecules       Date:  2022-05-23       Impact factor: 4.927

6.  Unveiling Zwitterionization of Glycine in the Microhydration Limit.

Authors:  Ravi Tripathi; Laura Durán Caballero; Ricardo Pérez de Tudela; Christoph Hölzl; Dominik Marx
Journal:  ACS Omega       Date:  2021-05-07

7.  On-the-Fly ab Initio Semiclassical Calculation of Glycine Vibrational Spectrum.

Authors:  Fabio Gabas; Riccardo Conte; Michele Ceotto
Journal:  J Chem Theory Comput       Date:  2017-05-26       Impact factor: 6.006

8.  Hydration of the Carboxylate Group in Anti-Inflammatory Drugs: ATR-IR and Computational Studies of Aqueous Solution of Sodium Diclofenac.

Authors:  Elena O Levina; Nikita V Penkov; Natalia N Rodionova; Sergey A Tarasov; Daria V Barykina; Mikhail V Vener
Journal:  ACS Omega       Date:  2018-01-10

9.  Impulsive UV-pump/X-ray probe study of vibrational dynamics in glycine.

Authors:  Riccardo Mincigrucci; Markus Kowalewski; Jérémy R Rouxel; Filippo Bencivenga; Shaul Mukamel; Claudio Masciovecchio
Journal:  Sci Rep       Date:  2018-10-18       Impact factor: 4.379

  9 in total

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