Literature DB >> 20855222

Development of accurate binding affinity predictions of novel renin inhibitors through molecular docking studies.

Aggeliki Politi1, Serdar Durdagi, Panagiota Moutevelis-Minakakis, George Kokotos, Thomas Mavromoustakos.   

Abstract

In this study, an attempt was made to explore a possible correlation between different docking scoring functions (Glide InducedFit docking score and GOLD's GoldScore and ChemScore) and binding energy values of a set of renin inhibitors, using linear regression model. The renin inhibitors under study are characterized by known bound to the receptor crystal structures possessing a great variety of pharmacophore groups and a wide range of IC₅₀ values. Linear regression models were derived to relate the docking scoring function and pIC₅₀ values of renin inhibitors under study. The developed derived models are seeking to be helpful for the rational design of new, more potent renin inhibitors.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20855222     DOI: 10.1016/j.jmgm.2010.08.003

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  8 in total

1.  Studies of H4R antagonists using 3D-QSAR, molecular docking and molecular dynamics.

Authors:  Jing Liu; Yan Li; Hui-Xiao Zhang; Shu-Wei Zhang; Ling Yang
Journal:  J Mol Model       Date:  2011-06-07       Impact factor: 1.810

2.  Exploring the substructural space of indole-3-carboxamide derivatives binding to renin: a novel active-site spatial partitioning approach.

Authors:  Tao Jing; Jian Feng; Yumei Zuo; Boli Ran; Jianping Liu; Guoxiang He
Journal:  J Mol Model       Date:  2012-05-16       Impact factor: 1.810

3.  Combined docking, molecular dynamics simulations and spectroscopic studies for the rational design of a dipeptide ligand for affinity chromatography separation of human serum albumin.

Authors:  Elham Aghaee; Jahan B Ghasemi; Firouzeh Manouchehri; Saeed Balalaie
Journal:  J Mol Model       Date:  2014-09-16       Impact factor: 1.810

4.  Development, evaluation and application of 3D QSAR Pharmacophore model in the discovery of potential human renin inhibitors.

Authors:  Shalini John; Sundarapandian Thangapandian; Mahreen Arooj; Jong Chan Hong; Kwang Dong Kim; Keun Woo Lee
Journal:  BMC Bioinformatics       Date:  2011-12-14       Impact factor: 3.169

5.  Optimal ligand descriptor for pocket recognition based on the Beta-shape.

Authors:  Jae-Kwan Kim; Chung-In Won; Jehyun Cha; Kichun Lee; Deok-Soo Kim
Journal:  PLoS One       Date:  2015-04-02       Impact factor: 3.240

6.  Isolation, purification and molecular mechanism of a peanut protein-derived ACE-inhibitory peptide.

Authors:  Aimin Shi; Hongzhi Liu; Li Liu; Hui Hu; Qiang Wang; Benu Adhikari
Journal:  PLoS One       Date:  2014-10-27       Impact factor: 3.240

7.  In silico exploration of novel protease inhibitors against coronavirus 2019 (COVID-19).

Authors:  Elham Aghaee; Marzieh Ghodrati; Jahan B Ghasemi
Journal:  Inform Med Unlocked       Date:  2021-01-12

8.  Synthesis, Bioactivity Assessment, and Molecular Docking of Non-sulfonamide Benzimidazole-Derived N-Acylhydrazone Scaffolds as Carbonic Anhydrase-II Inhibitors.

Authors:  Muhammad Saadiq; Ghias Uddin; Abdul Latif; Mumtaz Ali; Nazia Akbar; Sardar Ali; Manzoor Ahmad; Mohammad Zahoor; Ajmal Khan; Ahmed Al-Harrasi
Journal:  ACS Omega       Date:  2021-12-20
  8 in total

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