Literature DB >> 2085324

[Determination of the local structure of the protein insectotoxin I5A from the scorpion Buthus eupeus from 1H-NMR spectroscopy data].

A L Lomize, A S Arsen'ev, I V Maslennikov, V F Bystrov.   

Abstract

The local structure (torsion angles phi, psi and chi 1 of amino acid residues) of insectotoxin I5A (35 residues) of scorpion Buthus eupeus has been determined from cross-peak integral intensities in two-dimensional nuclear Overhauser enhancement (NOESY) spectra and spin coupling constants of vicinal H--NC alpha--H and H--C alpha C beta--H protons. The local structure determination was carried out by fitting complete relaxation matrix of peptide unit protons (protons of a given residue and NH proton of the next residue in the amino acid sequence) with experimental NOESY cross-peak intensities. The obtained intervals of backbone torsional angles phi and psi consistent with NMR data were determined for all but Gly residues. The predominant C alpha--C beta rotamer of the side chain has been unambiguously determined for 42% of the insectotoxin amino acid residues whereas for another 46% residues experimental data are fitted equally well with two rotamers. Stereospecific assignments were obtained for 38% of beta-methylene groups. The determined torsional angles phi, psi and chi 1 correspond to the sterically allowed conformations of the amino acid residues and agree with the insectotoxin secondary structure established earlier by 1H NMR spectroscopy.

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Year:  1990        PMID: 2085324

Source DB:  PubMed          Journal:  Bioorg Khim        ISSN: 0132-3423


  2 in total

1.  Three-dimensional structure of ectatomin from Ectatomma tuberculatum ant venom.

Authors:  D E Nolde; A G Sobol; K A Pluzhnikov; E V Grishin; A S Arseniev
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

2.  Kalium: a database of potassium channel toxins from scorpion venom.

Authors:  Alexey I Kuzmenkov; Nikolay A Krylov; Anton O Chugunov; Eugene V Grishin; Alexander A Vassilevski
Journal:  Database (Oxford)       Date:  2016-04-17       Impact factor: 3.451

  2 in total

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