Literature DB >> 20851913

Rubricoccus marinus gen. nov., sp. nov., of the family 'Rhodothermaceae', isolated from seawater.

Sanghwa Park1, Susumu Yoshizawa2, Kazuhiro Kogure2, Akira Yokota1.   

Abstract

A coccoid- and amorphous-shaped, non-gliding, reddish bacterium, designated SG-29(T), was isolated from seawater in the western North Pacific Ocean near Japan. The strain was Gram-stain-negative, obligately aerobic, heterotrophic and catalase-positive. Nitrate was reduced to nitrogen and acid was produced from aesculin, turanose, 2-keto-gluconate and arabinose. Growth occurred with 1-5 % NaCl (optimum 2 % NaCl) and at 5-37 °C (optimum 20-30 °C). The G+C content of genomic DNA was 68.9 mol% (HPLC). The predominant isoprenoid quinone was MK-7 and the major cellular fatty acids (>10 %) were iso-C₁₇:₁ω9c, C₁₇:₁ω8c and iso-C₁₇:₀. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SG-29(T) belonged to the phylum Bacteroidetes. The most closely related strain was Rhodothermus obamensis JCM 9785(T), with which the isolate exhibited 86.1 % 16S rRNA gene sequence similarity. On the basis of phenotypic and phylogenetic features, strain SG-29(T) is classified in a novel genus and species within the family 'Rhodothermaceae', for which the name Rubricoccus marinus gen. nov., sp. nov. ( = NBRC 107124(T)  = KCTC 23197(T)) is proposed.

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Year:  2010        PMID: 20851913     DOI: 10.1099/ijs.0.026294-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  8 in total

1.  Complete genome sequence of Rhodothermaceae bacterium RA with cellulolytic and xylanolytic activities.

Authors:  Kok Jun Liew; Seng Chong Teo; Mohd Shahir Shamsir; Rajesh Kumar Sani; Chun Shiong Chong; Kok-Gan Chan; Kian Mau Goh
Journal:  3 Biotech       Date:  2018-08-13       Impact factor: 2.406

2.  Genome Analysis of a New Rhodothermaceae Strain Isolated from a Hot Spring.

Authors:  Kian Mau Goh; Kok-Gan Chan; Soon Wee Lim; Kok Jun Liew; Chia Sing Chan; Mohd Shahir Shamsir; Robson Ee; Tan-Guan-Sheng Adrian
Journal:  Front Microbiol       Date:  2016-07-14       Impact factor: 5.640

3.  Genome-Based Taxonomic Classification of Bacteroidetes.

Authors:  Richard L Hahnke; Jan P Meier-Kolthoff; Marina García-López; Supratim Mukherjee; Marcel Huntemann; Natalia N Ivanova; Tanja Woyke; Nikos C Kyrpides; Hans-Peter Klenk; Markus Göker
Journal:  Front Microbiol       Date:  2016-12-20       Impact factor: 5.640

4.  Draft Genome Sequence of Rubricoccus marinus SG-29T, a Marine Bacterium within the Family Rhodothermaceae, Which Contains Two Different Rhodopsin Genes.

Authors:  Yu Nakajima; Susumu Yoshizawa; Sanghwa Park; Yohei Kumagai; Shu-Kuan Wong; Yoshitoshi Ogura; Tetsuya Hayashi; Kazuhiro Kogure
Journal:  Genome Announc       Date:  2017-09-21

5.  Global Transcriptomic Responses of Roseithermus sacchariphilus Strain RA in Media Supplemented with Beechwood Xylan.

Authors:  Kok Jun Liew; Neil C Bruce; Rajesh Kumar Sani; Chun Shiong Chong; Amira Suriaty Yaakop; Mohd Shahir Shamsir; Kian Mau Goh
Journal:  Microorganisms       Date:  2020-06-29

6.  A Survey of Spontaneous Antibiotic-Resistant Mutants of the Halophilic, Thermophilic Bacterium Rhodothermus marinus.

Authors:  Sophia Silvia; Samantha A Donahue; Erin E Killeavy; Gerwald Jogl; Steven T Gregory
Journal:  Antibiotics (Basel)       Date:  2021-11-11

7.  Marine cyanolichens from different littoral zones are associated with distinct bacterial communities.

Authors:  Nyree J West; Delphine Parrot; Claire Fayet; Martin Grube; Sophie Tomasi; Marcelino T Suzuki
Journal:  PeerJ       Date:  2018-07-17       Impact factor: 2.984

8.  Presence of a Haloarchaeal Halorhodopsin-Like Cl- Pump in Marine Bacteria.

Authors:  Yu Nakajima; Takashi Tsukamoto; Yohei Kumagai; Yoshitoshi Ogura; Tetsuya Hayashi; Jaeho Song; Takashi Kikukawa; Makoto Demura; Kazuhiro Kogure; Yuki Sudo; Susumu Yoshizawa
Journal:  Microbes Environ       Date:  2018-03-16       Impact factor: 2.912

  8 in total

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