Literature DB >> 20848031

A computational analysis of intramolecularity in proton transfer reactions.

Rafik Karaman1, Robert Pascal.   

Abstract

Hydrogen bonds along which most proton transfers take place are analyzed regarding their contribution to the efficiency of intramolecular processes through the assessment of effective molarities by DFT calculations on rigid intra-molecular model systems in comparison with their intermolecular counterparts. A few cyclic systems in which there is no possibility of hydrogen bonding between reactants neither in the ground state nor in the product are identified by theoretical calculations as leading to important rate increases in intramolecular general-base catalysis constituting a new exception to the rule of low effective molarities (EMs) for proton transfers. The recovery of high efficiency in these systems is attributed to the absence of special features facilitating the corresponding intermolecular reactions. This work confirms that any explanation of EMs found in intramolecular systems also requires a careful analysis of the corresponding bimolecular systems.

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Year:  2010        PMID: 20848031     DOI: 10.1039/c0ob00252f

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  7 in total

1.  Design, synthesis and in vitro kinetic study of tranexamic acid prodrugs for the treatment of bleeding conditions.

Authors:  Rafik Karaman; Hiba Ghareeb; Khuloud Kamal Dajani; Laura Scrano; Hussein Hallak; Saleh Abu-Lafi; Gennaro Mecca; Sabino A Bufo
Journal:  J Comput Aided Mol Des       Date:  2013-07-24       Impact factor: 3.686

2.  Computationally designed prodrugs of statins based on Kirby's enzyme model.

Authors:  Rafik Karaman; Wajd Amly; Laura Scrano; Gennaro Mecca; Sabino A Bufo
Journal:  J Mol Model       Date:  2013-07-09       Impact factor: 1.810

3.  Computer-assisted design for paracetamol masking bitter taste prodrugs.

Authors:  Hatem Hejaz; Rafik Karaman; Mustafa Khamis
Journal:  J Mol Model       Date:  2011-04-15       Impact factor: 1.810

4.  Prodrugs for masking bitter taste of antibacterial drugs--a computational approach.

Authors:  Rafik Karaman
Journal:  J Mol Model       Date:  2013-02-19       Impact factor: 1.810

5.  Computer-assisted design for atenolol prodrugs for the use in aqueous formulations.

Authors:  Rafik Karaman; Khuloud Dajani; Hussein Hallak
Journal:  J Mol Model       Date:  2011-07-23       Impact factor: 1.810

6.  Prodrugs of fumarate esters for the treatment of psoriasis and multiple sclerosis--a computational approach.

Authors:  Rafik Karaman; Ghadeer Dokmak; Maryam Bader; Hussein Hallak; Mustafa Khamis; Laura Scrano; Sabino Aurelio Bufo
Journal:  J Mol Model       Date:  2012-09-02       Impact factor: 1.810

Review 7.  Enzyme Models-From Catalysis to Prodrugs.

Authors:  Zeinab Breijyeh; Rafik Karaman
Journal:  Molecules       Date:  2021-05-28       Impact factor: 4.411

  7 in total

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