Literature DB >> 20847104

Invited commentary: Gene X lifestyle interactions and complex disease traits--inferring cause and effect from observational data, sine qua non.

Paul W Franks, Jennifer A Nettleton.   

Abstract

Observational epidemiology has made outstanding contributions to the discovery and elucidation of relations between lifestyle factors and common complex diseases such as type 2 diabetes. Recent major advances in the understanding of the human genetics of this disease have inspired studies that seek to determine whether the risk conveyed by bona fide risk loci might be modified by lifestyle factors such as diet composition and physical activity levels. A major challenge is to determine which of the reported findings are likely to represent causal interactions and which might be explained by other factors. The authors of this commentary use the Bradford-Hill criteria, a set of tried-and-tested guidelines for causal inference, to evaluate the findings of a recent study on interaction between variation at the cyclin-dependent kinase 5 regulatory subunit-associated protein 1-like 1 (CDKAL1) locus and total energy intake with respect to prevalent metabolic syndrome and hemoglobin A₁(c) levels in a cohort of 313 Japanese men. The current authors conclude that the study, while useful for hypothesis generation, does not provide overwhelming evidence of causal interactions. They overview ways in which future studies of gene × lifestyle interactions might overcome the limitations that motivated this conclusion.

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Year:  2010        PMID: 20847104      PMCID: PMC2984255          DOI: 10.1093/aje/kwq280

Source DB:  PubMed          Journal:  Am J Epidemiol        ISSN: 0002-9262            Impact factor:   4.897


  34 in total

Review 1.  Individual differences in response to regular physical activity.

Authors:  C Bouchard; T Rankinen
Journal:  Med Sci Sports Exerc       Date:  2001-06       Impact factor: 5.411

Review 2.  Markers of the validity of reported energy intake.

Authors:  M Barbara E Livingstone; Alison E Black
Journal:  J Nutr       Date:  2003-03       Impact factor: 4.798

3.  THE ENVIRONMENT AND DISEASE: ASSOCIATION OR CAUSATION?

Authors:  A B HILL
Journal:  Proc R Soc Med       Date:  1965-05

4.  Evidence for gene-nutrient interaction at the PPARgamma locus.

Authors:  J Luan; P O Browne; A H Harding; D J Halsall; S O'Rahilly; V K Chatterjee; N J Wareham
Journal:  Diabetes       Date:  2001-03       Impact factor: 9.461

5.  Blood glucose patterns and appetite in time-blinded humans: carbohydrate versus fat.

Authors:  K J Melanson; M S Westerterp-Plantenga; W H Saris; F J Smith; L A Campfield
Journal:  Am J Physiol       Date:  1999-08

6.  Prevention of type 2 diabetes mellitus by changes in lifestyle among subjects with impaired glucose tolerance.

Authors:  J Tuomilehto; J Lindström; J G Eriksson; T T Valle; H Hämäläinen; P Ilanne-Parikka; S Keinänen-Kiukaanniemi; M Laakso; A Louheranta; M Rastas; V Salminen; M Uusitupa
Journal:  N Engl J Med       Date:  2001-05-03       Impact factor: 91.245

7.  Reduction in the incidence of type 2 diabetes with lifestyle intervention or metformin.

Authors:  William C Knowler; Elizabeth Barrett-Connor; Sarah E Fowler; Richard F Hamman; John M Lachin; Elizabeth A Walker; David M Nathan
Journal:  N Engl J Med       Date:  2002-02-07       Impact factor: 91.245

8.  Using intake biomarkers to evaluate the extent of dietary misreporting in a large sample of adults: the OPEN study.

Authors:  Amy F Subar; Victor Kipnis; Richard P Troiano; Douglas Midthune; Dale A Schoeller; Sheila Bingham; Carolyn O Sharbaugh; Jillian Trabulsi; Shirley Runswick; Rachel Ballard-Barbash; Joel Sunshine; Arthur Schatzkin
Journal:  Am J Epidemiol       Date:  2003-07-01       Impact factor: 4.897

9.  Association of the Pro12Ala polymorphism in the PPAR-gamma2 gene with 3-year incidence of type 2 diabetes and body weight change in the Finnish Diabetes Prevention Study.

Authors:  Virpi I Lindi; Matti I J Uusitupa; Jaana Lindström; Anne Louheranta; Johan G Eriksson; Timo T Valle; Helena Hämäläinen; Pirjo Ilanne-Parikka; Sirkka Keinänen-Kiukaanniemi; Markku Laakso; Jaakko Tuomilehto
Journal:  Diabetes       Date:  2002-08       Impact factor: 9.461

10.  Association between physical activity and blood pressure is modified by variants in the G-protein coupled receptor 10.

Authors:  Paul W Franks; Sumit Bhattacharyya; Jian'an Luan; Carl Montague; John Brennand; Benjamin Challis; Søren Brage; Ulf Ekelund; Rita P S Middelberg; Stephen O'Rahilly; Nicholas J Wareham
Journal:  Hypertension       Date:  2003-12-22       Impact factor: 10.190

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  11 in total

Review 1.  Epigenetics of progression of chronic kidney disease: fact or fantasy?

Authors:  Maria R Wing; Ali Ramezani; Harindarpal S Gill; Joseph M Devaney; Dominic S Raj
Journal:  Semin Nephrol       Date:  2013-07       Impact factor: 5.299

Review 2.  Gene × environment interactions in type 2 diabetes.

Authors:  Paul W Franks
Journal:  Curr Diab Rep       Date:  2011-12       Impact factor: 4.810

Review 3.  Meta-analysis investigating associations between healthy diet and fasting glucose and insulin levels and modification by loci associated with glucose homeostasis in data from 15 cohorts.

Authors:  Jennifer A Nettleton; Marie-France Hivert; Rozenn N Lemaitre; Nicola M McKeown; Dariush Mozaffarian; Toshiko Tanaka; Mary K Wojczynski; Adela Hruby; Luc Djoussé; Julius S Ngwa; Jack L Follis; Maria Dimitriou; Andrea Ganna; Denise K Houston; Stavroula Kanoni; Vera Mikkilä; Ani Manichaikul; Ioanna Ntalla; Frida Renström; Emily Sonestedt; Frank J A van Rooij; Stefania Bandinelli; Lawrence de Koning; Ulrika Ericson; Neelam Hassanali; Jessica C Kiefte-de Jong; Kurt K Lohman; Olli Raitakari; Constantina Papoutsakis; Per Sjogren; Kathleen Stirrups; Erika Ax; Panos Deloukas; Christopher J Groves; Paul F Jacques; Ingegerd Johansson; Yongmei Liu; Mark I McCarthy; Kari North; Jorma Viikari; M Carola Zillikens; Josée Dupuis; Albert Hofman; Genovefa Kolovou; Kenneth Mukamal; Inga Prokopenko; Olov Rolandsson; Ilkka Seppälä; L Adrienne Cupples; Frank B Hu; Mika Kähönen; André G Uitterlinden; Ingrid B Borecki; Luigi Ferrucci; David R Jacobs; Stephen B Kritchevsky; Marju Orho-Melander; James S Pankow; Terho Lehtimäki; Jacqueline C M Witteman; Erik Ingelsson; David S Siscovick; George Dedoussis; James B Meigs; Paul W Franks
Journal:  Am J Epidemiol       Date:  2012-12-19       Impact factor: 4.897

Review 4.  Putting the Genome in Context: Gene-Environment Interactions in Type 2 Diabetes.

Authors:  Paul W Franks; Guillaume Paré
Journal:  Curr Diab Rep       Date:  2016-07       Impact factor: 4.810

5.  Type 2 Diabetes Genetics: Beyond GWAS.

Authors:  Dharambir K Sanghera; Piers R Blackett
Journal:  J Diabetes Metab       Date:  2012-06-23

Review 6.  The importance of gene-environment interactions in human obesity.

Authors:  Hudson Reddon; Jean-Louis Guéant; David Meyre
Journal:  Clin Sci (Lond)       Date:  2016-09-01       Impact factor: 6.124

Review 7.  Gene-environment interactions and obesity: recent developments and future directions.

Authors:  Tao Huang; Frank B Hu
Journal:  BMC Med Genomics       Date:  2015-01-15       Impact factor: 3.063

8.  Gene × dietary pattern interactions in obesity: analysis of up to 68 317 adults of European ancestry.

Authors:  Jennifer A Nettleton; Jack L Follis; Julius S Ngwa; Caren E Smith; Shafqat Ahmad; Toshiko Tanaka; Mary K Wojczynski; Trudy Voortman; Rozenn N Lemaitre; Kati Kristiansson; Marja-Liisa Nuotio; Denise K Houston; Mia-Maria Perälä; Qibin Qi; Emily Sonestedt; Ani Manichaikul; Stavroula Kanoni; Andrea Ganna; Vera Mikkilä; Kari E North; David S Siscovick; Kennet Harald; Nicola M Mckeown; Ingegerd Johansson; Harri Rissanen; Yongmei Liu; Jari Lahti; Frank B Hu; Stefania Bandinelli; Gull Rukh; Stephen Rich; Lisanne Booij; Maria Dmitriou; Erika Ax; Olli Raitakari; Kenneth Mukamal; Satu Männistö; Göran Hallmans; Antti Jula; Ulrika Ericson; David R Jacobs; Frank J A Van Rooij; Panos Deloukas; Per Sjögren; Mika Kähönen; Luc Djousse; Markus Perola; Inês Barroso; Albert Hofman; Kathleen Stirrups; Jorma Viikari; André G Uitterlinden; Ioanna P Kalafati; Oscar H Franco; Dariush Mozaffarian; Veikko Salomaa; Ingrid B Borecki; Paul Knekt; Stephen B Kritchevsky; Johan G Eriksson; George V Dedoussis; Lu Qi; Luigi Ferrucci; Marju Orho-Melander; M Carola Zillikens; Erik Ingelsson; Terho Lehtimäki; Frida Renström; L Adrienne Cupples; Ruth J F Loos; Paul W Franks
Journal:  Hum Mol Genet       Date:  2015-05-20       Impact factor: 6.150

Review 9.  Gene-environment and gene-treatment interactions in type 2 diabetes: progress, pitfalls, and prospects.

Authors:  Paul W Franks; Ewan Pearson; Jose C Florez
Journal:  Diabetes Care       Date:  2013-05       Impact factor: 19.112

10.  Gene × physical activity interactions in obesity: combined analysis of 111,421 individuals of European ancestry.

Authors:  Shafqat Ahmad; Gull Rukh; Tibor V Varga; Ashfaq Ali; Azra Kurbasic; Dmitry Shungin; Ulrika Ericson; Robert W Koivula; Audrey Y Chu; Lynda M Rose; Andrea Ganna; Qibin Qi; Alena Stančáková; Camilla H Sandholt; Cathy E Elks; Gary Curhan; Majken K Jensen; Rulla M Tamimi; Kristine H Allin; Torben Jørgensen; Soren Brage; Claudia Langenberg; Mette Aadahl; Niels Grarup; Allan Linneberg; Guillaume Paré; Patrik K E Magnusson; Nancy L Pedersen; Michael Boehnke; Anders Hamsten; Karen L Mohlke; Louis T Pasquale; Oluf Pedersen; Robert A Scott; Paul M Ridker; Erik Ingelsson; Markku Laakso; Torben Hansen; Lu Qi; Nicholas J Wareham; Daniel I Chasman; Göran Hallmans; Frank B Hu; Frida Renström; Marju Orho-Melander; Paul W Franks
Journal:  PLoS Genet       Date:  2013-07-25       Impact factor: 5.917

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