Literature DB >> 20842214

Molecular Data are Transforming Hypotheses on the Origin and Diversification of Eukaryotes.

Yonas I Tekle1, Laura Wegener Parfrey, Laura A Katz.   

Abstract

The explosion of molecular data has transformed hypotheses on both the origin of eukaryotes and the structure of the eukaryotic tree of life. Early ideas about the evolution of eukaryotes arose through analyses of morphology by light microscopy and later electron microscopy. Though such studies have proven powerful at resolving more recent events, theories on origins and diversification of eukaryotic life have been substantially revised in light of analyses of molecular data including gene and, increasingly, whole genome sequences. By combining these approaches, progress has been made in elucidating both the origin and diversification of eukaryotes. Yet many aspects of the evolution of eukaryotic life remain to be illuminated.

Entities:  

Year:  2009        PMID: 20842214      PMCID: PMC2938078          DOI: 10.1525/bio.2009.59.6.5

Source DB:  PubMed          Journal:  Bioscience        ISSN: 0006-3568            Impact factor:   8.589


  59 in total

1.  Tracing the Thread of Plastid Diversity through the Tapestry of Life.

Authors: 
Journal:  Am Nat       Date:  1999-10       Impact factor: 3.926

Review 2.  The chimeric eukaryote: origin of the nucleus from the karyomastigont in amitochondriate protists.

Authors:  L Margulis; M F Dolan; R Guerrero
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

3.  A kingdom-level phylogeny of eukaryotes based on combined protein data.

Authors:  S L Baldauf; A J Roger; I Wenk-Siefert; W F Doolittle
Journal:  Science       Date:  2000-11-03       Impact factor: 47.728

Review 4.  Photosynthetic eukaryotes unite: endosymbiosis connects the dots.

Authors:  Debashish Bhattacharya; Hwan Su Yoon; Jeremiah D Hackett
Journal:  Bioessays       Date:  2004-01       Impact factor: 4.345

5.  Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates.

Authors:  Jeremiah D Hackett; Hwan Su Yoon; Shenglan Li; Adrian Reyes-Prieto; Susanne E Rümmele; Debashish Bhattacharya
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

Review 6.  Evolution of the cytoskeleton.

Authors:  Harold P Erickson
Journal:  Bioessays       Date:  2007-07       Impact factor: 4.345

7.  The hydrogen hypothesis for the first eukaryote.

Authors:  W Martin; M Müller
Journal:  Nature       Date:  1998-03-05       Impact factor: 49.962

8.  The last eukaryotic common ancestor (LECA): acquisition of cytoskeletal motility from aerotolerant spirochetes in the Proterozoic Eon.

Authors:  Lynn Margulis; Michael Chapman; Ricardo Guerrero; John Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-22       Impact factor: 11.205

9.  A multigene analysis of Corallomyxa tenera sp. nov. suggests its membership in a clade that includes Gromia, Haplosporidia and Foraminifera.

Authors:  Yonas I Tekle; Jessica Grant; Jeffrey C Cole; Thomas A Nerad; O Roger Anderson; David J Patterson; Laura A Katz
Journal:  Protist       Date:  2007-07-03

10.  Broadly sampled multigene trees of eukaryotes.

Authors:  Hwan Su Yoon; Jessica Grant; Yonas I Tekle; Min Wu; Benjamin C Chaon; Jeffrey C Cole; John M Logsdon; David J Patterson; Debashish Bhattacharya; Laura A Katz
Journal:  BMC Evol Biol       Date:  2008-01-18       Impact factor: 3.260

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  9 in total

1.  Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.

Authors:  Laura A Katz; Jessica R Grant; Laura Wegener Parfrey; J Gordon Burleigh
Journal:  Syst Biol       Date:  2012-02-14       Impact factor: 15.683

2.  Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life.

Authors:  Laura Wegener Parfrey; Jessica Grant; Yonas I Tekle; Erica Lasek-Nesselquist; Hilary G Morrison; Mitchell L Sogin; David J Patterson; Laura A Katz
Journal:  Syst Biol       Date:  2010-07-23       Impact factor: 15.683

3.  Rapid shifts in the structure and composition of a protistan assemblage during bottle incubations affect estimates of total protistan species richness.

Authors:  Diane Y Kim; Peter D Countway; Rebecca J Gast; David A Caron
Journal:  Microb Ecol       Date:  2011-03-04       Impact factor: 4.552

4.  Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

Authors:  David A Caron; Peter D Countway; Pratik Savai; Rebecca J Gast; Astrid Schnetzer; Stefanie D Moorthi; Mark R Dennett; Dawn M Moran; Adriane C Jones
Journal:  Appl Environ Microbiol       Date:  2009-07-10       Impact factor: 4.792

Review 5.  Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Authors:  David A Caron; Harriet Alexander; Andrew E Allen; John M Archibald; E Virginia Armbrust; Charles Bachy; Callum J Bell; Arvind Bharti; Sonya T Dyhrman; Stephanie M Guida; Karla B Heidelberg; Jonathan Z Kaye; Julia Metzner; Sarah R Smith; Alexandra Z Worden
Journal:  Nat Rev Microbiol       Date:  2016-11-21       Impact factor: 60.633

Review 6.  Perspectives in PDK1 evolution: insights from photosynthetic and non-photosynthetic organisms.

Authors:  Anna C Nelson Dittrich; Timothy P Devarenne
Journal:  Plant Signal Behav       Date:  2012-05-14

7.  Cytoskeletal architecture and its evolutionary significance in amoeboid eukaryotes and their mode of locomotion.

Authors:  Yonas I Tekle; Jessica R Williams
Journal:  R Soc Open Sci       Date:  2016-09-28       Impact factor: 2.963

8.  A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes.

Authors:  Yonas I Tekle; Fiona C Wood
Journal:  BMC Evol Biol       Date:  2018-11-16       Impact factor: 3.260

9.  Amphitremida (poche, 1913) is a new major, ubiquitous labyrinthulomycete clade.

Authors:  Fatma Gomaa; Edward A D Mitchell; Enrique Lara
Journal:  PLoS One       Date:  2013-01-14       Impact factor: 3.240

  9 in total

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