Literature DB >> 20841834

Bridging the semantics gap between terminologies, ontologies, and information models.

Stefan Schulz1, Daniel Schober, Christel Daniel, Marie-Christine Jaulent.   

Abstract

SNOMED CT and other biomedical vocabularies provide semantic identifiers for all kinds of linguistic expressions, many of which cannot be considered terms in a strict sense. We analyzed such "non-terms" in SNOMED CT and concluded that many of them cannot be interpreted as directly referring to objects or processes, but rather to information entities. Discussing two approaches to represent information entities, viz. the OBO Information artifact ontology (IAO) and the HL7 v3 Reference Information Model (RIM), we propose an integrative solution for representing information entities in SNOMED CT, in a way that is still compatible with RIM and the IAO and uses moderately enhanced description logics.

Mesh:

Year:  2010        PMID: 20841834

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  2 in total

1.  Feasibility of using Clinical Element Models (CEM) to standardize phenotype variables in the database of genotypes and phenotypes (dbGaP).

Authors:  Ko-Wei Lin; Melissa Tharp; Mike Conway; Alexander Hsieh; Mindy Ross; Jihoon Kim; Hyeon-Eui Kim
Journal:  PLoS One       Date:  2013-09-18       Impact factor: 3.240

2.  TNM-O: ontology support for staging of malignant tumours.

Authors:  Martin Boeker; Fábio França; Peter Bronsert; Stefan Schulz
Journal:  J Biomed Semantics       Date:  2016-11-14
  2 in total

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