Literature DB >> 20836018

Toward a VPH/Physiome ToolKit.

Alan Garny1, Jonathan Cooper2, Peter J Hunter3.   

Abstract

The Physiome Project was officially launched in 1997 and has since brought together teams from around the world to work on the development of a computational framework for the modeling of the human body. At the European level, this effort is focused around patient-specific solutions and is known as the Virtual Physiological Human (VPH) Initiative.Such modeling is both multiscale (in space and time) and multiphysics. This, therefore, requires careful interaction and collaboration between the teams involved in the VPH/Physiome effort, if we are to produce computer models that are not only quantitative, but also integrative and predictive.In that context, several technologies and solutions are already available, developed both by groups involved in the VPH/Physiome effort, and by others. They address areas such as data handling/fusion, markup languages, model repositories, ontologies, tools (for simulation, imaging, data fitting, etc.), as well as grid, middleware, and workflow.Here, we provide an overview of resources that should be considered for inclusion in the VPH/Physiome ToolKit (i.e., the set of tools that addresses the needs and requirements of the Physiome Project and VPH Initiative) and discuss some of the challenges that we are still facing.

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Year:  2010        PMID: 20836018     DOI: 10.1002/wsbm.63

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  8 in total

1.  A tool for multi-scale modelling of the renal nephron.

Authors:  David P Nickerson; Jonna R Terkildsen; Kirk L Hamilton; Peter J Hunter
Journal:  Interface Focus       Date:  2011-03-30       Impact factor: 3.906

2.  Editorial: TBME Letters special issue on multiscale modeling and analysis in computational biology and medicine--part-2.

Authors:  Jean-Louis Coatrieux; Alejandro F Frangi; Grace C Y Peng; David Z D'Argenio; Vasilis Z Marmarelis; Anushka Michailova
Journal:  IEEE Trans Biomed Eng       Date:  2011-12       Impact factor: 4.538

Review 3.  Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success.

Authors:  Thomas E Yankeelov; Gary An; Oliver Saut; E Georg Luebeck; Aleksander S Popel; Benjamin Ribba; Paolo Vicini; Xiaobo Zhou; Jared A Weis; Kaiming Ye; Guy M Genin
Journal:  Ann Biomed Eng       Date:  2016-07-06       Impact factor: 3.934

4.  Module-based multiscale simulation of angiogenesis in skeletal muscle.

Authors:  Gang Liu; Amina A Qutub; Prakash Vempati; Feilim Mac Gabhann; Aleksander S Popel
Journal:  Theor Biol Med Model       Date:  2011-04-04       Impact factor: 2.432

5.  Computational modeling of the obstructive lung diseases asthma and COPD.

Authors:  Kelly Suzanne Burrowes; Tom Doel; Chris Brightling
Journal:  J Transl Med       Date:  2014-11-28       Impact factor: 5.531

Review 6.  Omics-Based Strategies in Precision Medicine: Toward a Paradigm Shift in Inborn Errors of Metabolism Investigations.

Authors:  Abdellah Tebani; Carlos Afonso; Stéphane Marret; Soumeya Bekri
Journal:  Int J Mol Sci       Date:  2016-09-14       Impact factor: 5.923

Review 7.  Perspectives of physiome research.

Authors:  Chae Hun Leem
Journal:  Integr Med Res       Date:  2016-01-05

Review 8.  Next-generation, personalised, model-based critical care medicine: a state-of-the art review of in silico virtual patient models, methods, and cohorts, and how to validation them.

Authors:  J Geoffrey Chase; Jean-Charles Preiser; Jennifer L Dickson; Antoine Pironet; Yeong Shiong Chiew; Christopher G Pretty; Geoffrey M Shaw; Balazs Benyo; Knut Moeller; Soroush Safaei; Merryn Tawhai; Peter Hunter; Thomas Desaive
Journal:  Biomed Eng Online       Date:  2018-02-20       Impact factor: 2.819

  8 in total

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