Literature DB >> 20835801

Protein quantitation using mass spectrometry.

Guoan Zhang1, Beatrix M Ueberheide, Sofia Waldemarson, Sunnie Myung, Kelly Molloy, Jan Eriksson, Brian T Chait, Thomas A Neubert, David Fenyö.   

Abstract

Mass spectrometry is a method of choice for quantifying low-abundance proteins and peptides in many biological studies. Here, we describe a range of computational aspects of protein and peptide quantitation, including methods for finding and integrating mass spectrometric peptide peaks, and detecting interference to obtain a robust measure of the amount of proteins present in samples.

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Year:  2010        PMID： 20835801      PMCID： PMC3758905          DOI： 10.1007/978-1-60761-842-3_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  26 in total

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Authors:  Y Oda; K Huang; F R Cross; D Cowburn; B T Chait
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

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Authors:  Xiao-Jun Li; Hui Zhang; Jeffrey A Ranish; Ruedi Aebersold
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4.  Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS.

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-27       Impact factor: 11.205

5.  Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards.

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6.  A model for random sampling and estimation of relative protein abundance in shotgun proteomics.

Authors:  Hongbin Liu; Rovshan G Sadygov; John R Yates
Journal:  Anal Chem       Date:  2004-07-15       Impact factor: 6.986

7.  Differential mass spectrometry: a label-free LC-MS method for finding significant differences in complex peptide and protein mixtures.

Authors:  Matthew C Wiener; Jeffrey R Sachs; Ekaterina G Deyanova; Nathan A Yates
Journal:  Anal Chem       Date:  2004-10-15       Impact factor: 6.986

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9.  Quantitative analysis of complex protein mixtures using isotope-coded affinity tags.

Authors:  S P Gygi; B Rist; S A Gerber; F Turecek; M H Gelb; R Aebersold
Journal:  Nat Biotechnol       Date:  1999-10       Impact factor: 54.908

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Review 2.  Targeting epigenetic mechanisms for chronic visceral pain: A valid approach for the development of novel therapeutics.

Authors:  Tijs Louwies; Casey O Ligon; Anthony C Johnson; Beverley Greenwood-Van Meerveld
Journal:  Neurogastroenterol Motil       Date:  2018-11-04       Impact factor: 3.598

3.  Molecular Counting with Localization Microscopy: A Bayesian Estimate Based on Fluorophore Statistics.

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4.  SSPaQ: A Subtractive Segmentation Approach for the Exhaustive Parallel Quantification of the Extent of Protein Modification at Every Possible Site.

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Journal:  J Am Soc Mass Spectrom       Date:  2016-05-31       Impact factor: 3.109

5.  High spatial resolution proteomic comparison of the brain in humans and chimpanzees.

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Journal:  J Comp Neurol       Date:  2015-07-14       Impact factor: 3.215

6.  Acrolein modification impairs key functional features of rat apolipoprotein E: identification of modified sites by mass spectrometry.

Authors:  Tuyen N Tran; Malathi G Kosaraju; Shiori Tamamizu-Kato; Olayemi Akintunde; Ying Zheng; John K Bielicki; Kent Pinkerton; Koji Uchida; Yuan Yu Lee; Vasanthy Narayanaswami
Journal:  Biochemistry       Date:  2014-01-08       Impact factor: 3.162

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Review 8.  Protein Phosphorylation and Redox Modification in Stomatal Guard Cells.

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10.  The Role of Mass Spectrometry in the "Omics" Era.

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