Literature DB >> 20833032

The conformation and structure of GAGs: recent progress and perspectives.

T R Rudd1, M A Skidmore, M Guerrini, M Hricovini, A K Powell, G Siligardi, E A Yates.   

Abstract

The glycosaminoglycan (GAG) family of linear sulphated polysaccharides are involved in most regulatory processes in the extracellular matrix of higher organisms. The relationship between GAG substitution pattern and activity, however, remains unclear and experimental evidence suggests that subtle conformational factors play an important role. The difficulty of modelling these complex charged molecules shifts the burden of investigation towards experimental techniques. Recent advances in complementary physical-chemical, particularly spectroscopy-based approaches are reviewed, together with methods for analysing the resulting complex data. The prospects for combining some of these approaches and fitting them into the wider context of interactions, are also discussed.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20833032     DOI: 10.1016/j.sbi.2010.08.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  12 in total

1.  Functional overlap between chondroitin and heparan sulfate proteoglycans during VEGF-induced sprouting angiogenesis.

Authors:  Sébastien Le Jan; Makoto Hayashi; Zsolt Kasza; Inger Eriksson; Joseph R Bishop; Irene Weibrecht; Johan Heldin; Katarina Holmborn; Lars Jakobsson; Ola Söderberg; Dorothe Spillmann; Jeffrey D Esko; Lena Claesson-Welsh; Lena Kjellén; Johan Kreuger
Journal:  Arterioscler Thromb Vasc Biol       Date:  2012-02-16       Impact factor: 8.311

2.  Drude Polarizable Force Field Parametrization of Carboxylate and N-Acetyl Amine Carbohydrate Derivatives.

Authors:  Poonam Pandey; Asaminew H Aytenfisu; Alexander D MacKerell; Sairam S Mallajosyula
Journal:  J Chem Theory Comput       Date:  2019-08-29       Impact factor: 6.006

3.  On the Biology of Werner's Complex.

Authors:  Raphael E F de Paiva; Erica J Peterson; Jaroslav Malina; Mary Zoepfl; J David Hampton; Wyatt E Johnson; Angelica Graminha; Amine Ourahmane; Michael A McVoy; Viktor Brabec; Susan J Berners-Price; Nicholas P Farrell
Journal:  Angew Chem Int Ed Engl       Date:  2021-06-27       Impact factor: 16.823

4.  Synthesis of a heparin-related GlcN-IdoA sulfation-site variable disaccharide library and analysis by Raman and ROA spectroscopy.

Authors:  Gavin J Miller; Steen U Hansen; Marek Baráth; Christian Johannessen; Ewan W Blanch; Gordon C Jayson; John M Gardiner
Journal:  Carbohydr Res       Date:  2014-07-14       Impact factor: 2.104

5.  Exploiting cell-mediated contraction and adhesion to structure tissues in vitro.

Authors:  Uchena N G Wudebwe; Alistair Bannerman; Pola Goldberg-Oppenheimer; Jennifer Z Paxton; Richard L Williams; Liam M Grover
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-02-05       Impact factor: 6.237

6.  Molecular Origins of the Compatibility between Glycosaminoglycans and Aβ40 Amyloid Fibrils.

Authors:  Katie L Stewart; Eleri Hughes; Edwin A Yates; David A Middleton; Sheena E Radford
Journal:  J Mol Biol       Date:  2017-07-10       Impact factor: 6.151

7.  Extended Physicochemical Characterization of the Synthetic Anticoagulant Pentasaccharide Fondaparinux Sodium by Quantitative NMR and Single Crystal X-ray Analysis.

Authors:  William de Wildt; Huub Kooijman; Carel Funke; Bülent Üstün; Afranina Leika; Maarten Lunenburg; Frans Kaspersen; Edwin Kellenbach
Journal:  Molecules       Date:  2017-08-17       Impact factor: 4.411

Review 8.  Heparan Sulfate Mimetics in Cancer Therapy: The Challenge to Define Structural Determinants and the Relevance of Targets for Optimal Activity.

Authors:  Cinzia Lanzi; Giuliana Cassinelli
Journal:  Molecules       Date:  2018-11-08       Impact factor: 4.411

9.  Glycosaminoglycan monosaccharide blocks analysis by quantum mechanics, molecular dynamics, and nuclear magnetic resonance.

Authors:  Sergey A Samsonov; Stephan Theisgen; Thomas Riemer; Daniel Huster; M Teresa Pisabarro
Journal:  Biomed Res Int       Date:  2014-04-07       Impact factor: 3.411

10.  Chemical Structure and Immunomodulating Activities of an α-Glucan Purified from Lobelia chinensis Lour.

Authors:  Xiao-Jun Li; Wan-Rong Bao; Chung-Hang Leung; Dik-Lung Ma; Ge Zhang; Ai-Ping Lu; Shun-Chun Wang; Quan-Bin Han
Journal:  Molecules       Date:  2016-06-15       Impact factor: 4.411

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