Literature DB >> 20832349

The Rice Kinase Phylogenomics Database: a guide for systematic analysis of the rice kinase super-family.

Ki-Hong Jung1, Peijian Cao, Young-Su Seo, Christopher Dardick, Pamela C Ronald.   

Abstract

Determination of gene function is particularly problematic when studying large-gene families because redundancy limits the ability to assess the contributions of individual genes experimentally. Phylogenomics is a phylogenetic approach used in comparative genomics to predict the biological functions of members of large gene-families by assessing the similarity among gene products. In this report, we describe the application of the Rice Kinase Database for elucidating functions of individual members of this gene family.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20832349     DOI: 10.1016/j.tplants.2010.08.004

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  24 in total

Review 1.  Mitogen-activated protein kinase signaling in plants under abiotic stress.

Authors:  Alok Krishna Sinha; Monika Jaggi; Badmi Raghuram; Narendra Tuteja
Journal:  Plant Signal Behav       Date:  2011-02-01

2.  The contribution of SERF1 to root-to-shoot signaling during salinity stress in rice.

Authors:  Romy Schmidt; Camila Caldana; Bernd Mueller-Roeber; Jos H M Schippers
Journal:  Plant Signal Behav       Date:  2014-01-21

Review 3.  Innate immunity in rice.

Authors:  Xuewei Chen; Pamela C Ronald
Journal:  Trends Plant Sci       Date:  2011-05-24       Impact factor: 18.313

4.  Dynamic Cytology and Transcriptional Regulation of Rice Lamina Joint Development.

Authors:  Li-Juan Zhou; Lang-Tao Xiao; Hong-Wei Xue
Journal:  Plant Physiol       Date:  2017-05-12       Impact factor: 8.340

5.  Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice.

Authors:  Romy Schmidt; Delphine Mieulet; Hans-Michael Hubberten; Toshihiro Obata; Rainer Hoefgen; Alisdair R Fernie; Joachim Fisahn; Blanca San Segundo; Emmanuel Guiderdoni; Jos H M Schippers; Bernd Mueller-Roeber
Journal:  Plant Cell       Date:  2013-06-25       Impact factor: 11.277

6.  Evolutionary history of mitogen-activated protein kinase (MAPK) genes in Lotus, Medicago, and Phaseolus.

Authors:  Achal Neupane; Madhav P Nepal; Benjamin V Benson; Kenton J Macarthur; Sarbottam Piya
Journal:  Plant Signal Behav       Date:  2013-12-02

7.  Phenylalanine ammonia-lyase family is closely associated with response to phosphate deficiency in rice.

Authors:  Yun-Shil Gho; Sang-Jin Kim; Ki-Hong Jung
Journal:  Genes Genomics       Date:  2019-11-17       Impact factor: 1.839

8.  Oryza sativa heat-induced RING finger protein 1 (OsHIRP1) positively regulates plant response to heat stress.

Authors:  Ju Hee Kim; Sung Don Lim; Cheol Seong Jang
Journal:  Plant Mol Biol       Date:  2019-02-07       Impact factor: 4.076

9.  Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.

Authors:  Romy Schmidt; Jos H M Schippers; Annelie Welker; Delphine Mieulet; Emmanuel Guiderdoni; Bernd Mueller-Roeber
Journal:  AoB Plants       Date:  2012-05-21       Impact factor: 3.276

10.  Protein phosphorylation in plant immunity: insights into the regulation of pattern recognition receptor-mediated signaling.

Authors:  Chang-Jin Park; Daniel F Caddell; Pamela C Ronald
Journal:  Front Plant Sci       Date:  2012-08-03       Impact factor: 5.753

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