Literature DB >> 20832316

Animating the model figure.

Janet H Iwasa1.   

Abstract

In all branches of scientific inquiry, researchers build models that enable them to visualize, formulate and communicate their hypotheses to others. In cell biology, our conceptual understanding of a process is typically embodied in a model figure. These visual models should ideally represent pre-existing knowledge of molecular interactions, movement, structure and localization but, in reality, they often fall short. Cell biologists have begun to look to the use of three-dimensional animation to visualize and describe complex molecular and cellular events. In addition to aiding teaching and communication, animation is emerging as a powerful tool for providing researchers with insight into the processes that they study. Two case studies focusing on the structure/function of the motor protein dynein and the structure of the centriole are discussed.
Copyright © 2010 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2010        PMID: 20832316     DOI: 10.1016/j.tcb.2010.08.005

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  13 in total

1.  Transparency in film: increasing credibility of scientific animation using citation.

Authors:  Stuart G Jantzen; Jodie Jenkinson; Gaël McGill
Journal:  Nat Methods       Date:  2015-04       Impact factor: 28.547

Review 2.  A guide to the visual analysis and communication of biomolecular structural data.

Authors:  Graham T Johnson; Samuel Hertig
Journal:  Nat Rev Mol Cell Biol       Date:  2014-09-23       Impact factor: 94.444

3.  Preparing scientists for a visual future: Visualization is a powerful tool for research and communication but requires training and support.

Authors:  Shraddha Nayak; Janet H Iwasa
Journal:  EMBO Rep       Date:  2019-10-14       Impact factor: 8.807

4.  The Scientist as Illustrator.

Authors:  Janet H Iwasa
Journal:  Trends Immunol       Date:  2016-03-09       Impact factor: 16.687

5.  ePMV embeds molecular modeling into professional animation software environments.

Authors:  Graham T Johnson; Ludovic Autin; David S Goodsell; Michel F Sanner; Arthur J Olson
Journal:  Structure       Date:  2011-03-09       Impact factor: 5.006

Review 6.  Perspectives on Structural Molecular Biology Visualization: From Past to Present.

Authors:  Arthur J Olson
Journal:  J Mol Biol       Date:  2018-07-23       Impact factor: 5.469

7.  Regarding the amazing choreography of clathrin coats.

Authors:  Linton M Traub
Journal:  PLoS Biol       Date:  2011-03-22       Impact factor: 8.029

8.  Visualization and 3D reconstruction of flame cells of Taenia solium (cestoda).

Authors:  Laura E Valverde-Islas; Esteban Arrangoiz; Elio Vega; Lilia Robert; Rafael Villanueva; Olivia Reynoso-Ducoing; Kaethe Willms; Armando Zepeda-Rodríguez; Teresa I Fortoul; Javier R Ambrosio
Journal:  PLoS One       Date:  2011-03-11       Impact factor: 3.240

9.  Visualizing protein interactions and dynamics: evolving a visual language for molecular animation.

Authors:  Jodie Jenkinson; Gaël McGill
Journal:  CBE Life Sci Educ       Date:  2012       Impact factor: 3.325

10.  Game on, science - how video game technology may help biologists tackle visualization challenges.

Authors:  Zhihan Lv; Alex Tek; Franck Da Silva; Charly Empereur-mot; Matthieu Chavent; Marc Baaden
Journal:  PLoS One       Date:  2013-03-06       Impact factor: 3.240

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