Literature DB >> 20831344

Symmetry in biology: from genetic code to stochastic gene regulation.

A F Ramos1, G C P Innocentini, F M Forger, J E M Hornos.   

Abstract

Mathematical models, as instruments for understanding the workings of nature, are a traditional tool of physics, but they also play an ever increasing role in biology--in the description of fundamental processes as well as that of complex systems. In this review, the authors discuss two examples of the application of group theoretical methods, which constitute the mathematical discipline for a quantitative description of the idea of symmetry, to genetics. The first one appears, in the form of a pseudo-orthogonal (Lorentz like) symmetry, in the stochastic modelling of what may be regarded as the simplest possible example of a genetic network and, hopefully, a building block for more complicated ones: a single self-interacting or externally regulated gene with only two possible states: 'on' and 'off'. The second is the algebraic approach to the evolution of the genetic code, according to which the current code results from a dynamical symmetry breaking process, starting out from an initial state of complete symmetry and ending in the presently observed final state of low symmetry. In both cases, symmetry plays a decisive role: in the first, it is a characteristic feature of the dynamics of the gene switch and its decay to equilibrium, whereas in the second, it provides the guidelines for the evolution of the coding rules.

Mesh:

Year:  2010        PMID: 20831344     DOI: 10.1049/iet-syb.2010.0058

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  5 in total

1.  Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation.

Authors:  Kenneth A Barr; Carlos Martinez; Jennifer R Moran; Ah-Ram Kim; Alexandre F Ramos; John Reinitz
Journal:  BMC Syst Biol       Date:  2017-11-29

2.  Binary Expression Enhances Reliability of Messaging in Gene Networks.

Authors:  Leonardo R Gama; Guilherme Giovanini; Gábor Balázsi; Alexandre F Ramos
Journal:  Entropy (Basel)       Date:  2020-04-22       Impact factor: 2.524

3.  Identification of approximate symmetries in biological development.

Authors:  Punit Gandhi; Maria-Veronica Ciocanel; Karl Niklas; Adriana T Dawes
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2021-11-08       Impact factor: 4.226

4.  A Stochastic Binary Model for the Regulation of Gene Expression to Investigate Responses to Gene Therapy.

Authors:  Guilherme Giovanini; Luciana R C Barros; Leonardo R Gama; Tharcisio C Tortelli; Alexandre F Ramos
Journal:  Cancers (Basel)       Date:  2022-01-27       Impact factor: 6.575

Review 5.  Lessons and perspectives for applications of stochastic models in biological and cancer research.

Authors:  Alan U Sabino; Miguel Fs Vasconcelos; Misaki Yamada Sittoni; Willian W Lautenschlager; Alexandre S Queiroga; Mauro Cc Morais; Alexandre F Ramos
Journal:  Clinics (Sao Paulo)       Date:  2018-09-21       Impact factor: 2.365

  5 in total

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