Literature DB >> 20826130

Categorical data analysis in experimental biology.

Bo Xu1, Xuyan Feng, Rebecca D Burdine.   

Abstract

The categorical data set is an important data class in experimental biology and contains data separable into several mutually exclusive categories. Unlike measurement of a continuous variable, categorical data cannot be analyzed with methods such as the Student's t-test. Thus, these data require a different method of analysis to aid in interpretation. In this article, we will review issues related to categorical data, such as how to plot them in a graph, how to integrate results from different experiments, how to calculate the error bar/region, and how to perform significance tests. In addition, we illustrate analysis of categorical data using experimental results from developmental biology and virology studies.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20826130      PMCID: PMC3021327          DOI: 10.1016/j.ydbio.2010.08.018

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  8 in total

1.  Evolution of photosynthetic prokaryotes: a maximum-likelihood mapping approach.

Authors:  Jason Raymond; Olga Zhaxybayeva; J Peter Gogarten; Robert E Blankenship
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-01-29       Impact factor: 6.237

2.  Treeness triangles: visualizing the loss of phylogenetic signal.

Authors:  W T White; S F Hills; R Gaddam; B R Holland; David Penny
Journal:  Mol Biol Evol       Date:  2007-07-13       Impact factor: 16.240

3.  Two-sided confidence intervals for the single proportion: comparison of seven methods.

Authors:  R G Newcombe
Journal:  Stat Med       Date:  1998-04-30       Impact factor: 2.373

4.  Human cytomegalovirus pUS24 is a virion protein that functions very early in the replication cycle.

Authors:  Xuyan Feng; Jörg Schröer; Dong Yu; Thomas Shenk
Journal:  J Virol       Date:  2006-09       Impact factor: 5.103

5.  Mutations in zebrafish leucine-rich repeat-containing six-like affect cilia motility and result in pronephric cysts, but have variable effects on left-right patterning.

Authors:  Fabrizio C Serluca; Bo Xu; Noriko Okabe; Kari Baker; Shin-Yi Lin; Jessica Sullivan-Brown; David J Konieczkowski; Kimberly M Jaffe; Joshua M Bradner; Mark C Fishman; Rebecca D Burdine
Journal:  Development       Date:  2009-05       Impact factor: 6.868

6.  Zebrafish curly up encodes a Pkd2 ortholog that restricts left-side-specific expression of southpaw.

Authors:  Jodi Schottenfeld; Jessica Sullivan-Brown; Rebecca D Burdine
Journal:  Development       Date:  2007-03-14       Impact factor: 6.868

7.  Error bars in experimental biology.

Authors:  Geoff Cumming; Fiona Fidler; David L Vaux
Journal:  J Cell Biol       Date:  2007-04-09       Impact factor: 10.539

8.  Many genes in fish have species-specific asymmetric rates of molecular evolution.

Authors:  Dirk Steinke; Walter Salzburger; Ingo Braasch; Axel Meyer
Journal:  BMC Genomics       Date:  2006-02-08       Impact factor: 3.969

  8 in total
  14 in total

1.  Multiple post-translational modifications affect heterologous protein synthesis.

Authors:  Alexander A Tokmakov; Atsushi Kurotani; Tetsuo Takagi; Mitsutoshi Toyama; Mikako Shirouzu; Yasuo Fukami; Shigeyuki Yokoyama
Journal:  J Biol Chem       Date:  2012-06-06       Impact factor: 5.157

2.  Rapid Mechanically Controlled Rewiring of Neuronal Circuits.

Authors:  Margaret H Magdesian; G Monserratt Lopez-Ayon; Megumi Mori; Dominic Boudreau; Alexis Goulet-Hanssens; Ricardo Sanz; Yoichi Miyahara; Christopher J Barrett; Alyson E Fournier; Yves De Koninck; Peter Grütter
Journal:  J Neurosci       Date:  2016-01-20       Impact factor: 6.167

3.  BK Polyomavirus Activates the DNA Damage Response To Prolong S Phase.

Authors:  Joshua L Justice; Jason M Needham; Sunnie R Thompson
Journal:  J Virol       Date:  2019-06-28       Impact factor: 5.103

4.  The multinomial logistic regression model for predicting the discharge status after liver transplantation: estimation and diagnostics analysis.

Authors:  E M Hashimoto; E M M Ortega; G M Cordeiro; A K Suzuki; M W Kattan
Journal:  J Appl Stat       Date:  2019-12-24       Impact factor: 1.416

5.  Anatomic position determines oncogenic specificity in melanoma.

Authors:  Joshua M Weiss; Miranda V Hunter; Nelly M Cruz; Arianna Baggiolini; Mohita Tagore; Yilun Ma; Sandra Misale; Michelangelo Marasco; Theresa Simon-Vermot; Nathaniel R Campbell; Felicity Newell; James S Wilmott; Peter A Johansson; John F Thompson; Georgina V Long; John V Pearson; Graham J Mann; Richard A Scolyer; Nicola Waddell; Emily D Montal; Ting-Hsiang Huang; Philip Jonsson; Mark T A Donoghue; Christopher C Harris; Barry S Taylor; Tianhao Xu; Ronan Chaligné; Pavel V Shliaha; Ronald Hendrickson; Achim A Jungbluth; Cecilia Lezcano; Richard Koche; Lorenz Studer; Charlotte E Ariyan; David B Solit; Jedd D Wolchok; Taha Merghoub; Neal Rosen; Nicholas K Hayward; Richard M White
Journal:  Nature       Date:  2022-03-30       Impact factor: 69.504

6.  From Mouth-level to Tooth-level DMFS: Conceptualizing a Theoretical Framework.

Authors:  Dipankar Bandyopadhyay
Journal:  J Dent Oral Craniofac Epidemiol       Date:  2013

7.  Low frequency vibrations disrupt left-right patterning in the Xenopus embryo.

Authors:  Laura N Vandenberg; Brian W Pennarola; Michael Levin
Journal:  PLoS One       Date:  2011-08-03       Impact factor: 3.240

8.  Content of intrinsic disorder influences the outcome of cell-free protein synthesis.

Authors:  Alexander A Tokmakov; Atsushi Kurotani; Mariko Ikeda; Yumiko Terazawa; Mikako Shirouzu; Vasily Stefanov; Tetsuya Sakurai; Shigeyuki Yokoyama
Journal:  Sci Rep       Date:  2015-09-11       Impact factor: 4.379

9.  Proliferative stem cells maintain quiescence of their niche by secreting the Activin inhibitor Follistatin.

Authors:  Salvador C Herrera; Diego Sainz de la Maza; Lydia Grmai; Shally Margolis; Rebecca Plessel; Michael Burel; Michael O'Connor; Marc Amoyel; Erika A Bach
Journal:  Dev Cell       Date:  2021-08-06       Impact factor: 13.417

10.  Neurally Derived Tissues in Xenopus laevis Embryos Exhibit a Consistent Bioelectrical Left-Right Asymmetry.

Authors:  Vaibhav P Pai; Laura N Vandenberg; Douglas Blackiston; Michael Levin
Journal:  Stem Cells Int       Date:  2012-12-30       Impact factor: 5.443

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