Literature DB >> 20821203

Metabolic fluxes and beyond-systems biology understanding and engineering of microbial metabolism.

Michael Kohlstedt1, Judith Becker, Christoph Wittmann.   

Abstract

The recent years have seen tremendous progress towards the understanding of microbial metabolism on a higher level of the entire functional system. Hereby, huge achievements including the sequencing of complete genomes and efficient post-genomic approaches provide the basis for a new, fascinating era of research-analysis of metabolic and regulatory properties on a global scale. Metabolic flux (fluxome) analysis displays the first systems oriented approach to unravel the physiology of microorganisms since it combines experimental data with metabolic network models and allows determining absolute fluxes through larger networks of central carbon metabolism. Hereby, fluxes are of central importance for systems level understanding because they fundamentally represent the cellular phenotype as integrated output of the cellular components, i.e. genes, transcripts, proteins, and metabolites. A currently emerging and promising area of research in systems biology and systems metabolic engineering is therefore the integration of fluxome data in multi-omics studies to unravel the multiple layers of control that superimpose the flux network and enable its optimal operation under different environmental conditions.

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Year:  2010        PMID: 20821203     DOI: 10.1007/s00253-010-2854-2

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  17 in total

1.  CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics.

Authors:  Zhengdong Zhang; Tie Shen; Bin Rui; Wenwei Zhou; Xiangfei Zhou; Chuanyu Shang; Chenwei Xin; Xiaoguang Liu; Gang Li; Jiansi Jiang; Chao Li; Ruiyuan Li; Mengshu Han; Shanping You; Guojun Yu; Yin Yi; Han Wen; Zhijie Liu; Xiaoyao Xie
Journal:  Nucleic Acids Res       Date:  2014-11-11       Impact factor: 16.971

Review 2.  Methods and advances in metabolic flux analysis: a mini-review.

Authors:  Maciek R Antoniewicz
Journal:  J Ind Microbiol Biotechnol       Date:  2015-01-23       Impact factor: 3.346

3.  Linking post-translational modifications and variation of phenotypic traits.

Authors:  Warren Albertin; Philippe Marullo; Marina Bely; Michel Aigle; Aurélie Bourgais; Olivier Langella; Thierry Balliau; Didier Chevret; Benoît Valot; Telma da Silva; Christine Dillmann; Dominique de Vienne; Delphine Sicard
Journal:  Mol Cell Proteomics       Date:  2012-12-27       Impact factor: 5.911

4.  Revisiting Protocols for the NMR Analysis of Bacterial Metabolomes.

Authors:  Steven Halouska; Bo Zhang; Rosmarie Gaupp; Shulei Lei; Emily Snell; Robert J Fenton; Raul G Barletta; Greg A Somerville; Robert Powers
Journal:  J Integr OMICS       Date:  2013-12

5.  Core fluxome and metafluxome of lactic acid bacteria under simulated cocoa pulp fermentation conditions.

Authors:  Philipp Adler; Christoph Josef Bolten; Katrin Dohnt; Carl Erik Hansen; Christoph Wittmann
Journal:  Appl Environ Microbiol       Date:  2013-07-12       Impact factor: 4.792

6.  Large-Scale 13C flux profiling reveals conservation of the Entner-Doudoroff pathway as a glycolytic strategy among marine bacteria that use glucose.

Authors:  Arne Klingner; Annekathrin Bartsch; Marco Dogs; Irene Wagner-Döbler; Dieter Jahn; Meinhard Simon; Thorsten Brinkhoff; Judith Becker; Christoph Wittmann
Journal:  Appl Environ Microbiol       Date:  2015-01-23       Impact factor: 4.792

7.  The pyruvate-tricarboxylic acid cycle node: a focal point of virulence control in the enteric pathogen Yersinia pseudotuberculosis.

Authors:  René Bücker; Ann Kathrin Heroven; Judith Becker; Petra Dersch; Christoph Wittmann
Journal:  J Biol Chem       Date:  2014-08-27       Impact factor: 5.157

8.  The key to acetate: metabolic fluxes of acetic acid bacteria under cocoa pulp fermentation-simulating conditions.

Authors:  Philipp Adler; Lasse Jannis Frey; Antje Berger; Christoph Josef Bolten; Carl Erik Hansen; Christoph Wittmann
Journal:  Appl Environ Microbiol       Date:  2014-08       Impact factor: 4.792

9.  Consequences of phosphoenolpyruvate:sugar phosphotranferase system and pyruvate kinase isozymes inactivation in central carbon metabolism flux distribution in Escherichia coli.

Authors:  Eugenio Meza; Judith Becker; Francisco Bolivar; Guillermo Gosset; Christoph Wittmann
Journal:  Microb Cell Fact       Date:  2012-09-13       Impact factor: 5.328

10.  Bridging the gap between systems biology and synthetic biology.

Authors:  Di Liu; Allison Hoynes-O'Connor; Fuzhong Zhang
Journal:  Front Microbiol       Date:  2013-07-25       Impact factor: 5.640

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