Literature DB >> 20815562

Dynamical effects in ab initio NMR calculations: classical force fields fitted to quantum forces.

Mark Robinson1, Peter D Haynes.   

Abstract

NMR chemical shifts for an L-alanine molecular crystal are calculated using ab initio plane wave density functional theory. Dynamical effects including anharmonicity may be included by averaging chemical shifts over an ensemble of structural configurations generated using molecular dynamics (MD). The time scales required mean that ab initio MD is prohibitively expensive. Yet the sensitivity of chemical shifts to structural details requires that the methodologies for performing MD and calculating NMR shifts be consistent. This work resolves these previously competing requirements by fitting classical force fields to reproduce ab initio forces. This methodology is first validated by reproducing the averaged chemical shifts found using ab initio molecular dynamics. Study of a supercell of L-alanine demonstrates that finite size effects can be significant when accounting for dynamics.

Entities:  

Year:  2010        PMID: 20815562     DOI: 10.1063/1.3474573

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Interrogation of the protein-protein interactions between human BRCA2 BRC repeats and RAD51 reveals atomistic determinants of affinity.

Authors:  Daniel J Cole; Eeson Rajendra; Meredith Roberts-Thomson; Bryn Hardwick; Grahame J McKenzie; Mike C Payne; Ashok R Venkitaraman; Chris-Kriton Skylaris
Journal:  PLoS Comput Biol       Date:  2011-07-14       Impact factor: 4.475

2.  The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine.

Authors:  Xiaozhou Li; Marcus A Neumann; Jacco van de Streek
Journal:  IUCrJ       Date:  2017-02-15       Impact factor: 4.769

3.  Errors in the calculation of (27)Al nuclear magnetic resonance chemical shifts.

Authors:  Xianlong Wang; Chengfei Wang; Hui Zhao
Journal:  Int J Mol Sci       Date:  2012-11-21       Impact factor: 5.923

4.  Enhanced NMR Discrimination of Pharmaceutically Relevant Molecular Crystal Forms through Fragment-Based Ab Initio Chemical Shift Predictions.

Authors:  Joshua D Hartman; Graeme M Day; Gregory J O Beran
Journal:  Cryst Growth Des       Date:  2016-10-04       Impact factor: 4.076

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.