Literature DB >> 2081264

The influence of macromolecular crowding on thermodynamic activity: solubility and dimerization constants for spherical and dumbbell-shaped molecules in a hard-sphere mixture.

O G Berg1.   

Abstract

Macromolecules in solution can have large effects on the properties of other solutes through nonideal excluded-volume (crowding) interactions. Minton has calculated such effects by treating the macromolecules as a hard-sphere fluid in a background of an inert structureless solvent. In the present paper these calculations are extended by including the primary solvent as a separate component in a hard-sphere mixture. The results are in good agreement with experimental data. However, some predictions of this model differ drastically from those based on Minton's approach. Thus, much smaller effects from macromolecular crowding, particularly by smaller molecules, are expected. The present results also predict a much larger dependence on the shape of the molecules under study; notably for a dimerization reaction, it is found that the excluded-volume effects actually can destabilize side-by-side binding of two spherical molecules, while a dimerization to a spherical complex is stabilized. Therefore there will exist intermediate shapes of complexes whose stability is insensitive to crowded-volume effects. The consequences for crowding effects inside the living cell are also discussed.

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Year:  1990        PMID: 2081264     DOI: 10.1002/bip.360301104

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  26 in total

1.  COVOL: an interactive program for evaluating second virial coefficients from the triaxial shape or dimensions of rigid macromolecules.

Authors:  S E Harding; J C Horton; S Jones; J M Thornton; D J Winzor
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

2.  Excluded volume in solvation: sensitivity of scaled-particle theory to solvent size and density.

Authors:  K E Tang; V A Bloomfield
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

3.  Effects of macromolecular crowding on biochemical reaction equilibria: a molecular thermodynamic perspective.

Authors:  Zhongqiao Hu; Jianwen Jiang; Raj Rajagopalan
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

4.  IkappaB, NF-kappaB regulation model: simulation analysis of small number of molecules.

Authors:  Anamika Sarkar; Marina Meila; Robert B Franza
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007

5.  Macromolecular crowding modulates folding mechanism of alpha/beta protein apoflavodoxin.

Authors:  Dirar Homouz; Loren Stagg; Pernilla Wittung-Stafshede; Margaret S Cheung
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

6.  Common crowding agents have only a small effect on protein-protein interactions.

Authors:  Yael Phillip; Eilon Sherman; Gilad Haran; Gideon Schreiber
Journal:  Biophys J       Date:  2009-08-05       Impact factor: 4.033

7.  The effects of macromolecular crowding on the mechanical stability of protein molecules.

Authors:  Jian-Min Yuan; Chia-Lin Chyan; Huan-Xiang Zhou; Tse-Yu Chung; Haibo Peng; Guanghui Ping; Guoliang Yang
Journal:  Protein Sci       Date:  2008-09-09       Impact factor: 6.725

8.  Molten globule and native state ensemble of Helicobacter pylori flavodoxin: can crowding, osmolytes or cofactors stabilize the native conformation relative to the molten globule?

Authors:  N Cremades; J Sancho
Journal:  Biophys J       Date:  2008-04-25       Impact factor: 4.033

9.  Analysis of the size dependence of macromolecular crowding shows that smaller is better.

Authors:  Kim A Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-15       Impact factor: 11.205

10.  Quantifying enzyme activity in living cells.

Authors:  Agnes Zotter; Felix Bäuerle; Debabrata Dey; Vladimir Kiss; Gideon Schreiber
Journal:  J Biol Chem       Date:  2017-08-07       Impact factor: 5.157

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