Literature DB >> 20809655

Evidence of the E*-E equilibrium from rapid kinetics of Na+ binding to activated protein C and factor Xa.

Austin D Vogt1, Alaji Bah, Enrico Di Cera.   

Abstract

Na(+) binding to thrombin enhances the procoagulant and prothrombotic functions of the enzyme and obeys a mechanism that produces two kinetic phases: one fast (in the microsecond time scale) due to Na(+) binding to the low activity form E to produce the high activity form E:Na(+) and another considerably slower (in the millisecond time scale) that reflects a pre-equilibrium between E and the inactive form E*. In this study, we demonstrate that this mechanism also exists in other Na(+)-activated clotting proteases like factor Xa and activated protein C. These findings, along with recent structural data, suggest that the E*-E equilibrium is a general feature of the trypsin fold.

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Year:  2010        PMID: 20809655      PMCID: PMC3050025          DOI: 10.1021/jp105502c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  110 in total

1.  The refined crystal structure of bovine beta-trypsin at 1.8 A resolution. I. Crystallization, data collection and application of patterson search technique.

Authors:  H Fehlhammer; W Bode
Journal:  J Mol Biol       Date:  1975-11-15       Impact factor: 5.469

2.  Mechanism of Na(+) binding to thrombin resolved by ultra-rapid kinetics.

Authors:  Stefano Gianni; Ylva Ivarsson; Alaji Bah; Leslie A Bush-Pelc; Enrico Di Cera
Journal:  Biophys Chem       Date:  2007-09-29       Impact factor: 2.352

3.  Mechanism of the anticoagulant activity of thrombin mutant W215A/E217A.

Authors:  Prafull S Gandhi; Michael J Page; Zhiwei Chen; Leslie Bush-Pelc; Enrico Di Cera
Journal:  J Biol Chem       Date:  2009-07-08       Impact factor: 5.157

4.  Mutant N143P reveals how Na+ activates thrombin.

Authors:  Weiling Niu; Zhiwei Chen; Leslie A Bush-Pelc; Alaji Bah; Prafull S Gandhi; Enrico Di Cera
Journal:  J Biol Chem       Date:  2009-10-21       Impact factor: 5.157

5.  Protective signaling by activated protein C is mechanistically linked to protein C activation on endothelial cells.

Authors:  Clemens Feistritzer; Reto A Schuepbach; Laurent O Mosnier; Leslie A Bush; Enrico Di Cera; John H Griffin; Matthias Riewald
Journal:  J Biol Chem       Date:  2006-05-18       Impact factor: 5.157

6.  Na+ binding to meizothrombin desF1.

Authors:  M E Papaconstantinou; P S Gandhi; Z Chen; A Bah; E Di Cera
Journal:  Cell Mol Life Sci       Date:  2008-11       Impact factor: 9.261

Review 7.  Serine proteases.

Authors:  Enrico Di Cera
Journal:  IUBMB Life       Date:  2009-05       Impact factor: 3.885

8.  Molecular basis of thrombomodulin activation of slow thrombin.

Authors:  T E Adams; W Li; J A Huntington
Journal:  J Thromb Haemost       Date:  2009-07-28       Impact factor: 5.824

9.  Crystal structure of a prostate kallikrein isolated from stallion seminal plasma: a homologue of human PSA.

Authors:  Ana L Carvalho; Libia Sanz; Domingo Barettino; Antonio Romero; Juan J Calvete; Maria J Romão
Journal:  J Mol Biol       Date:  2002-09-13       Impact factor: 5.469

10.  Crystal structure of wild-type human thrombin in the Na+-free state.

Authors:  Daniel J D Johnson; Ty E Adams; Wei Li; James A Huntington
Journal:  Biochem J       Date:  2005-11-15       Impact factor: 3.857

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  17 in total

Review 1.  Conformational selection in trypsin-like proteases.

Authors:  Nicola Pozzi; Austin D Vogt; David W Gohara; Enrico Di Cera
Journal:  Curr Opin Struct Biol       Date:  2012-06-03       Impact factor: 6.809

2.  Conformational selection or induced fit? A critical appraisal of the kinetic mechanism.

Authors:  Austin D Vogt; Enrico Di Cera
Journal:  Biochemistry       Date:  2012-07-16       Impact factor: 3.162

3.  Why Ser and not Thr brokers catalysis in the trypsin fold.

Authors:  Leslie A Pelc; Zhiwei Chen; David W Gohara; Austin D Vogt; Nicola Pozzi; Enrico Di Cera
Journal:  Biochemistry       Date:  2015-02-11       Impact factor: 3.162

4.  Crystal structure of prethrombin-1.

Authors:  Zhiwei Chen; Leslie A Pelc; Enrico Di Cera
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

Review 5.  Allostery in trypsin-like proteases suggests new therapeutic strategies.

Authors:  David W Gohara; Enrico Di Cera
Journal:  Trends Biotechnol       Date:  2011-07-02       Impact factor: 19.536

Review 6.  Essential role of conformational selection in ligand binding.

Authors:  Austin D Vogt; Nicola Pozzi; Zhiwei Chen; Enrico Di Cera
Journal:  Biophys Chem       Date:  2013-09-25       Impact factor: 2.352

Review 7.  Molecular Mechanisms of Enzyme Activation by Monovalent Cations.

Authors:  David W Gohara; Enrico Di Cera
Journal:  J Biol Chem       Date:  2016-07-26       Impact factor: 5.157

8.  Crystallographic and kinetic evidence of allostery in a trypsin-like protease.

Authors:  Weiling Niu; Zhiwei Chen; Prafull S Gandhi; Austin D Vogt; Nicola Pozzi; Leslie A Pelc; Fatima Zapata; Enrico Di Cera
Journal:  Biochemistry       Date:  2011-06-30       Impact factor: 3.162

9.  Rigidification of the autolysis loop enhances Na(+) binding to thrombin.

Authors:  Nicola Pozzi; Raymond Chen; Zhiwei Chen; Alaji Bah; Enrico Di Cera
Journal:  Biophys Chem       Date:  2011-04-12       Impact factor: 2.352

10.  Conformational selection is a dominant mechanism of ligand binding.

Authors:  Austin D Vogt; Enrico Di Cera
Journal:  Biochemistry       Date:  2013-08-15       Impact factor: 3.162

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